Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: EAA32346 hpth-1-1

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Description

ubiquitin ligase complex F-box protein GRR1

Location

Chromosome V: 3,271,670-3,275,778 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 27 domains and features.

Gene

This transcript is a product of gene NCU01216 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
hpth-1-1	EAA32346	3890	800aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7RVX0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........cgtagaggtatgttgttgttaggaatatccaagaaataacagggcacgat
1	EAA32346-1	3,275,778	3,274,101	0	0	1,678	CAAATCCTCCAGGAAGAATACGAAGACCTCAGCAAGACGAGCTGGATCGGAGGTTTACGC CCGACCGTTGAGAGCGGCAGTGACCCGAGAGCGTGACCGGGAAATAGATGCTAAGTGCCT GCTTCCCTCAGTGCCGCTCACTGACGCTGCAGCTTTCCCCCACTCGTCCTGTTGCCCTGT CTCGCCTTGTGCCAGCCAGGTTTCGCCCATTCCCTTTCCATCCGCATTCAAGCACTCCGT CCAAACCTACGTACTAGGTAGGTAGGTACCTCTAGTGAAGGCCCTGCACAGTCAGTGCAG CTACCAGTGCCGCTGTCGGTTTCCCGCTACCAACAATAAACCCCGGGCATCTTCTCTTGC TCAACCGGGCGGCATCCTCTTCAAGCAAGCGAGCCCCATCAACCTTGCAACACAAATCGC CATCATCGACAATTAGGTCTTCGTCCTTTCCCCCCGACAACAACTTTCCATTCTTTGTAC CAGTATACAATAAATAGCACGCTTGAAAGACAAGAGGCGCCAGTGCTACCAACACGTCGG CACACCATCTCCACGGCTTCTTGACCAACTTGGACCGAACCTCCACCCTCCGCTCACGCC GCCCCGACTTTCCTCCCGTCTTTCTGAGGGCCATCTCGTCACTCCTAGTCTTCCACCGTC TACCTGCCAATAAGCAGAGGCTCCCTTGACCTGGCATTTGATCAACCTGCAGCCCTGGTC CCCCTAGCACCTTAACCCACCCCGACGAGCAATCAACCGATCCTCGCGCTTACTTAGTCA TCCATCGCCTTGCCTCTTGTCGCGCTCCTCCCGACAACTTGCTCGACGACTCTACACATC TCTCTTCGCTTGCCACCAGACTGGCACGACTTTTATCATGAGGCTACGTGCTTCTCTCGA CATAATCGCCGACGACCGGAGAACACCGATGGCCCACGGGGACGCGGCTCCCGAAGCTCA CTCGGAGGCCGCCCAACAGCAGGCTCAAGACGATTCACGATCAACTTCGTCGTCGAGCAC CCCTCCGCCCGTCGACAATGAAGAATCCGACTTCTTTCTCGCTGCGAACGACTCCCAGTC GTCGCTAGGCGTTCCCAATATCGAGAACATGCAAGTCGCCGACGAGGAGTGCCGTGTAGC GCCTATTAATCGCTTGCCCAACGAACTACTCATTGCCATCTTCGTCAAACTCACAACCTC CTCAGATATTCTCCATGTCATGCTGACATGCAAGTCATGGGCTCGGAATGCAGTGGAAAT TCTGTGGCACCGTCCAGCTTGCTCATCCTGGGAACGACACACGATCATCTGCCAAACTCT CAGTGCGCCACGACCGTACTTCGCCTACCGACATTTCATCAGGCGACTCAATTTGTCAGC CCTCGCTCCCGAACTCAACGATGGCAGTGTCGAGTCTTTGGAGATGTGCAGTCGTGTCGA GCGACTGACCATGACTGGTTGCAAACGCATCACGGATGCTGGTCTCCTCAAATTGCTACG GAACAACACTGGCCTCCTGGCTCTCGACATTTCTGGCATGGAAGACATCACGGAAACTTC TATTAACGCTGTGGCGGAAAAGTGCTCTAGACTACAGGGCCTTAATATCTCCAACTGCAC TAAGATCTCAATTGCGAGTCTGGTGCAGCTGGCGCAGAGCTGCAGATTTATCAAGAGG
	Intron 1-2	3,274,100	3,273,999			102	gtaagttgtttccactacatcgccc..........acgctaacgtcttttgtccatgcag
2	EAA32346-2	3,273,998	3,273,267	0	0	732	TTGAAATTGAACGAGTGCGCTCAGGTGACTGACGAGGCCGTCATCGCATTCGCTGAGAAT TGCCCCAACATCCTCGAGATCGATCTTCACCAATGCCGCCTAATTGGGAACGATCCGGTT ACGGCGCTTATGTCTAAAGGCAAAGCTCTTCGAGAGCTCCGCCTTGCGAGTTGCGATTTG ATCGACGACTCTGCCTTCCTTTCCTTACCTCCAAACAAGACCTACGAGCAACTCCGAATC CTAGACCTGACGTCTTGCTCCAGACTGACGGACCGAGCTGTTGAGAAGATCATTGATGTA GCTCCTCGCTTGCGCAACCTCGTGCTCGCGAAGTGTCGTAACATCACAGATGCTGCTGTG TTCGCTATCGCCAGGCTGGGCAAGAATCTGCACTATGTCCATCTGGGCCACTGCGGAAAC ATCACAGATGAAGCTGTCAAACGTCTGGTTCAATGTTGTAACCGGATTCGATACATCGAC CTCGGTTGCTGCGTCCATTTGACAGATGACTCTGTCGTGAGACTTGCTACTTTGCCCAAG CTTAAGCGCATTGGTTTGGTCAAATGTTCAAATATCACAGATGAGAGTGTCTACGCTCTT GCTAGGGCGAATCAACGCCGGCCTCGCAGAGATGCTGACGGTAATCTTGTTCCCGGGGAC TGTTACAACAACATGCACCACAGTAGCCTTGAGAGGGTTCATTTGAGCTATTGCACCAAC CTGACATTGAGG
	Intron 2-3	3,273,266	3,273,212			55	gtaagtgaaatcgtgaattatccat..........ttgtgatcctaacattttcccttag
3	EAA32346-3	3,273,211	3,273,100	0	1	112	AGTGTCCTAAGACTTCTGAACGCGTGCCCTCGTCTCACTCACTTGAGTGTTACGGGTGTC CAAGCGTTCCTGCGGGAGGATTTGGAGAGTTTCTGCCGCGAGGCACCAGCTG
	Intron 3-4	3,273,099	3,273,038			62	gtatgctgataatccctcccaagcg..........gttcaagggctaacgaaacctacag
4	EAA32346-4	3,273,037	3,271,670	1	1	1,368	AGTTCACCGAACATCAGAGAGCTGTTTTCTGCGTCTTTTCCGGCCAGGGGGTGACGAATC TTCGGCGCTACCTCAACAGCGAGCACAATCTGACAGAGATCGCTCGTGGTGCAAGACCAA TCGACGAAGGAGTGCCGAACCGAGTCGGCCCCGTTTTCCCAGGAACAGCAGTCAACCCCA TGCAGGTCACTCCACCTGGTCACCATGGCGCAGCAGCTGCGTTCATTGACGATGGCGAGC CTGATGCGGTGGACGACGATGATGGCTTGGAAGATGGGAGCGAGATGGTAATTGACACGC AGCCAATGCTGCACAATCACCATGCGGTTATGGGCGGTACTGCGTTCCCTATACAGGGCG TGGCATCCACAGAACAGCTGCTGCCGCCGCCACCACCTGCGATACAGCCACAGCAGCACC TCGTTACGAACCCCTTCCACTTTGTTCCTGGCCAGCCTTTTGCCATACCACCTCATGGCC TTCAGTTTTATGAGGCGGTGCGGGCGACAGAATCCGGTGCCGTTTCTGGGACCCCTACGC ATGTTCCGTTAGTTGGTCAAGCGACGGGGCTGGAATCAACAATCGCTGAAGGCAGCCATC ATTCAGGAGTTGCCAGGAACTCACCAGGTACAGCAACATCTCAAAACCCAGATGCATCGC AGGCCGTCCCCCCAAACCCGATGGGGAATATCGAGCTGGCGATACTCACAGGCAACCGAA ATCCTGATCTGGGTGGCAGTGGAGGGGCGTCTGTATAGCGCGCGTTGCGGTTTTACTTTG AGCAATAATGCCACGGCTTCTTCCTAGTTCGCGATGGATGAGTGGGGGTGGATGGAAATA CGGTTTTACTTCTGGTGGTTCGTGGGATACATAAAATTTTGACTGGAATACTTCGCAGGC TGTAGCGGGGCGTTTCAATGACTTTATGATTATCGCTGTGTGCTCATCGAAGATGCCGAG TGGCTCGTCTTCTTATACCGGGAGCTGCGGCTTTTCGAAGACCTAAGAGGTTACCCATTA CATTAGGCTAGAAGATTGTTATTTATGCCTTTGCCTTCATTCGTATCTGCTTTTATTTCG AGTTTTGACATTTCTTCAGTTGGCCTTCGGTACGCGATGAGCACCAATGGGGGGTCCTCC ACCAACAATAGAAGAACGTGTGCCGACAGCACGCAACAGGATGGCTCGTGCAGGACAAAA TTGATGACAATCGAATTCAGATTTTGACTCTGCACCCGTCGAACGGCTGGGCGGCTTTAA GGCAAGAAACCATGACAAAAATGGGTTGGTTAGATACCACAAATACTACAGAATTGTATA GACTTCATAGGCGCTGTCGTAGAGCATTAAATACAATAGATTTCGTTG
	3' downstream sequence						acttgtgtgctactttggctgagcttggtgctataatgggcggtggactc..........

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