Aspergillus fumigatus A1163 (CADRE)

Funding

CADRE is currently funded by SYBARIS, an EU Framework Programe 7 collaborative project, grant agreement number 242220.

Funding for the incorporation of the Aspergillus nidulans genome within Ensembl Genomes has been provided by the European Commission under FELICS, contract number 021902 (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme.

About the Aspergillus fumigatus A1163 genome

Sequencing and first-pass automated annotation of the A. fumigatus A1163 genome was carried out by the JCVI. It consists of 55 scaffolds. This isolate is a derivative of A. fumigatus CEA17 converted to pyrG+ via the ectopic insertion of the A. niger pyrG gene. CEA17 is a uracil auxotroph of A. fumigatus clinical isolate CEA10. Using PASA and EvidenceModeler (EVM), consensus gene models were generated from GlimmerHMM, Genezilla, SNAP, Genewise and Twinscan. Transitive functional annotation was performed between A. fumigatus Af293 proteins to their A1163 orthologues.

Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

Picture credit: Aspergillus/Aspergillosis Website owned by the Fungal Research Trust

Taxonomy ID 451804

Data source CADRE

More information and statistics

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

About this species