About the Aspergillus fumigatus A1163 genome
Sequencing and first-pass automated annotation of the A. fumigatus A1163 genome was carried out by the JCVI. It consists of 55 scaffolds. This isolate is a derivative of A. fumigatus CEA17 converted to pyrG+ via the ectopic insertion of the A. niger pyrG gene. CEA17 is a uracil auxotroph of A. fumigatus clinical isolate CEA10. Using PASA and EvidenceModeler (EVM), consensus gene models were generated from GlimmerHMM, Genezilla, SNAP, Genewise and Twinscan. Transitive functional annotation was performed between A. fumigatus Af293 proteins to their A1163 orthologues.
Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor: