Aspergillus oryzae

Aspergillus oryzae

Data Source CADRE | Taxonomy ID 510516

Funding

CADRE is currently funded by SYBARIS, an EU Framework Programe 7 collaborative project, grant agreement number 242220.

Funding for the incorporation of the Aspergillus nidulans genome within Ensembl Genomes has been provided by the European Commission under FELICS, contract number 021902 (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme.

About the Aspergillus oryzae genome

In December 2005, a Japanese consortium, led by The National Institute of Advanced Industrial Science and Technology (AIST) publically released the A. oryzae (RIB40) genome. A list of the consortium members can found be on the NITE website.

The genome sequence was obtained by using the whole-genome shotgun (WGS) approach followed by gap closure and directed sequencing of repeats. Mapping of scaffolds to chromosomes was done by hybridisation to electrophorectically separated chromosomes and digested genomic dna. The assembly and scaffolds were further validated by optical mapping. First-pass automated annotation was carried out using the Cluster of Orthologous Groups (COG) classification.

There are eight chromosomes (1 to 8) and three unassigned fragments annotated within CADRE.

Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

Picture credit: Aspergillus/Aspergillosis Website owned by the Fungal Research Trust

More information and statistics

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

About this species