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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
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Transcript: CEN60488

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Description

hypothetical protein

Location

SuperContig SCAF2: 3,331,541-3,333,539 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 7 domains and features.

Gene

This transcript is a product of gene ASPCAL02925 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	CEN60488	1765	539aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........gtactttctccttgtgattatcttgaaccacgctcgctgtcagatacaca
1	CEN60488-1	3,333,539	3,333,228	0	0	312	ATGTCCCAGACAACATCCCCGCTACCTTCTACCAATCGGGGTAAACGCATCCTCATCTCA GCTCTCGAACATCGAGCGAAAAATGAACCCCACAGCCCCTGGATGTCTGTCCCAGTCGAC GATCAGGATCTGTCCCGCGGTTATAGAGACATCACGTACAAGCAAGTGAACAATGCCGCC AACCATACCGCTCACTGGCTCGCTCAAAACCTCCCCAAGTCTTCGGAGCCATTTCAGGCC TTTGCGTATGCCGGTCCAAAGGATCTCCGTTATCAGCTGCTTGCATTGGCGGCTGCCAAG TTGCAGAAGGTG
	Intron 1-2	3,333,227	3,333,157			71	gtaagtagatgcgggcggaaagcac..........gatcttctctctgcatctcctgtag
2	CEN60488-2	3,333,156	3,332,892	0	1	265	CTGGTCCTTCCCTCGCCGCTCGTCACGGCGGAGGCGCAGTTACGCATTCTCGCGAAGAAA CGCTGCACAATCTATTTGAGGCCCGCCTCAATGGCAGATCATGTTACGGCGATTCTCCAC GGGACCTCTCATATTCAAGCTATCGAGGTCCCGGGTATTGAAGAATGTTTCCGGGAAGAG GAAGCGGAGACTATTACATATAGCAAAACGTGGGACGAAGGAAAGGATGATCCGTGGTTG GTATATCACACCTCAGGGACTACAG
	Intron 2-3	3,332,891	3,332,797			95	gtatgttctcctctataggccttcc..........aaaagtaaagctaatttcaagaaag
3	CEN60488-3	3,332,796	3,332,660	1	0	137	GGAGTCCGAAACCTGTCACGTATACCCACTACATGATGGCTGGAGTGGACATTGCGGCTT CCCTGCCAGGTGAAGAGGAGAGCATCCTCCATCAGATGGCGAGCTCGAGGTGGTTTACAC CGTTGCCCTCAATGCAC
	Intron 3-4	3,332,659	3,332,592			68	gtatgtttccaccaccatccacgtg..........cacttactgactaggagcttcgtag
4	CEN60488-4	3,332,591	3,331,541	0	1	1,051	TACGTCGGAATGCTCCTCTCAATAGGCATGACCACATATCTAAACATGACCGCAGTGATC GGGCCCTCCGGACCACCAACTCCCGATATCATACGGGATACAATCCGCTACGGCCGCGCA GAAGCAGCCCTCCTCCCCCCAGCACTAATCGACGCATGCTGCCTATCCCCCACAGCACTC GAAGCCATTCGAGGCCTGAAACACCTGCTATACTCCGGCGCGACCCTCTCCGCCAAATCC GCCGAGCTACTCATCCCCTATACGAAAGTCGTCTCGGCGGTGGGGACCACGGAGGCAGGC GGGTACTGGACGACCGTCCCCAAGGAACGCGACGCGTGGGAGTATCTGGGTTTTCCCCGG CATCTGGGGGTTACCTTTGAGCGCAGGATGGATGATCTCCATGAGCTTATCTGGGTCCGC GATGATGCCCTGCCGTTCCAGCAGATCTTCAAGGTCTATCCGGAGCTTGAGCGGTTTGAG ACGAAGGATTTATGGAGAGAACATCCGGTCCATAAAGGGTTGTGGAAGATTATCGGGCGC CTTGATGATTATGTCTATTTATCGCATGCGGACGGGCTGCATGCGTCCTCATTAGAGCCC GAGATAACGGCCCACCCGAGTGTGAAATCTGCCGTGATTGGGGGCCATGGTCGGCCAGCG CCGGTTCTACTTGTCGAGCTGAACCCGGGAACGGAATATAGGGATGACCATCAAGCTCTG ATTGAGAGTCTGCAGCCCTATATTCAGCGAGTAAATGCAAGGGTCCACGAGTGTGTCCGC CTTTCGCCAGAGCGGGTTATTGTCGCGACGAAGGAGAAGCCTTTTGTGCTTACTGTGAAG GATAGTGTGGCGAGGCTGCAGACGCTTGCTCTGTACGAGGATGAGATTGCGGCCCTTTTT ACATAGTAGAAGCCAGCTTGGGGCTGTTTGGCCAATCGTGGTACTACTAGCCCACGTTGC CATGTGTTCTCTCTGTCGACATCTTCAGCGTCAGCGTGGAGCTACTCCACCCGAACGCCA TATAGTTAGTGTTTTTGCCCTAAAAGAGAGA
	3' downstream sequence						taacagtgaggtacactatcacgatactgtgagtatcactggctgttgga..........

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