EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

Trichoderma reesei (GCA_000167675.2)

Trichoderma reesei Assembly and Gene Annotation

About the Trichoderma reesei genome

Trichoderma reesei is a haploid filamentous fungus from the phylum Ascomycota. It is of industrial significance due to its production of cellulytic enzymes that can be used for conversion of plant biomass into glucose.

Picture credit: US Department of Energy Office of Science

Assembly

The current draft assembly of Trichoderma reesei was produced by JGI, and has been loaded from the 33 scaffolds (total length 33.4Mb) deposited in INSDC as GCA_000167675.

Annotation

Gene models have been created using on feature annotation from the corresponding INSDC records submitted by JGI as the WGS project AAIL2000000. Additional non-coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

References

  1. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
    Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D et al. 2008. Nat. Biotechnol.. 26:553-560.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assemblyv2.0, INSDC Assembly GCA_000167675.2, Jul 2011
Database version112.2
Golden Path Length33,395,713
Genebuild byJGI
Genebuild methodImport
Data sourceJGI

Gene counts

Coding genes9,113
Non coding genes531
Small non coding genes529
Misc non coding genes2
Pseudogenes7
Gene transcripts9,653