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Fusarium oxysporum (FO2) ▼

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About Fusarium oxysporum f. sp. lycopersici

Fusarium oxysporum, an ascomycete fungus, comprises all the species, varieties and forms recognized by Wollenweber and Reinking within an infrageneric grouping called section Elegans. It is part of the family Nectriaceae.

Picture credit: Public domain via Wikimedia Commons (Image source) Taxonomy ID 660025

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Taxonomy ID 426428

Data source Broad Institute

More information and statistics

View karyotypeExample region

Genome assembly: FO2

More information and statistics

Download DNA sequence (FASTA)

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Example geneExample transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Example gene tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Example variant

Variation

What can I find? Short sequence variants.

More about variation in Ensembl Fungi

Download all variants - GVF - VCF - VEP

Variant Effect Predictor

Other Data

  • Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.
  • 'Expressed Sequence Tags' (ESTs) from dbEST are aligned to the genome using Exonerate.