Statistics on protein trees

The protein tree pipeline is described at the following page.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Tuber borchii

Tuber magnatum

Tuber melanosporum Mel28

Arthrobotrys oligospora ATCC 24927

Drechslerella stenobrocha 248

Dactylellina haptotyla CBS 200.50

Erysiphe necator

Erysiphe pulchra

Blumeria graminis f. sp. hordei DH14

Oidiodendron maius Zn

Amorphotheca resinae ATCC 22711

Sclerotinia borealis F-4128

Sclerotinia sclerotiorum 1980 UF-70 ASM14694v1

Botrytis cinerea B05.10

Meliniomyces bicolor E

Hyaloscypha variabilis F

Glarea lozoyensis ATCC 20868

Marssonina brunnea f. sp. 'multigermtubi' MB_m1

Diplocarpon rosae

Phialocephala subalpina

Phialocephala scopiformis

Rhynchosporium secalis

Rhynchosporium agropyri

Rhynchosporium commune

Cadophora sp. DSE1049

Rutstroemia sp. NJR-2017a BBW

Rutstroemia sp. NJR-2017a BVV2

Rutstroemia sp. NJR-2017a WRK4

Pezoloma ericae

Verticillium dahliae VdLs.17

Verticillium longisporum vl2.denovo.v1

Colletotrichum graminicola M1.001

Colletotrichum higginsianum

Colletotrichum orbiculare MAFF 240422

Colletotrichum fructicola Nara gc5

Scedosporium apiospermum

Lomentospora prolificans

Thielaviopsis punctulata

Ceratocystis platani

Stachybotrys chlorohalonata IBT 40285

Stachybotrys chartarum IBT 40288

Fusarium verticillioides 7600

Fusarium fujikuroi EF1

Fusarium pseudograminearum CS3096

Fusarium culmorum CS7071

Fusarium graminearum CS3005v1

Fusarium oxysporum f. sp. lycopersici 4287 FO2

[Nectria] haematococca mpVI 77-13-4

Neonectria ditissima

Trichoderma asperellum CBS 433.97

Trichoderma guizhouense

Trichoderma parareesei

Trichoderma harzianum ASM98886v1

Trichoderma virens Gv29-8

Trichoderma citrinoviride

Trichoderma longibrachiatum ATCC 18648

Trichoderma atroviride IMI 206040

Trichoderma gamsii

Trichoderma reesei QM6a

Escovopsis weberi

Cordyceps fumosorosea ARSEF 2679

Beauveria brongniartii RCEF 3172

Cordyceps militaris CM01

Cordyceps sp. RAO-2017

Cordyceps confragosa RCEF 1005

Beauveria bassiana ASM168263v1

Ustilaginoidea virens Assembly_for_version_1_of_the_Villosiclava_virens_genome

Acremonium chrysogenum ATCC 11550

Metarhizium rileyi RCEF 4871

Metarhizium majus ARSEF 297

Metarhizium acridum CQMa 102

Metarhizium album ARSEF 1941

Metarhizium robertsii ARSEF 23

Torrubiella hemipterigena

Claviceps purpurea 20.1

Pochonia chlamydosporia 170

Moelleriella libera RCEF 2490

Ophiocordyceps camponoti-rufipedis

Ophiocordyceps australis OphauG2

Tolypocladium capitatum

Tolypocladium ophioglossoides CBS 100239

Tolypocladium paradoxum

Purpureocillium lilacinum ASM165320v1

Hirsutella minnesotensis 3608

Drechmeria coniospora

Hypoxylon sp. CI-4A

Daldinia sp. EC12

Microdochium bolleyi

Eutypa lata UCREL1

Pseudomassariella vexata

Rosellinia necatrix

Pestalotiopsis fici W106-1

Diaporthe helianthi

Diaporthe ampelina

Coniella lustricola

Valsa mali var. pyri

Magnaporthiopsis poae ATCC 64411

Gaeumannomyces tritici R3-111a-1

Pyricularia oryzae 70-15

Neurospora crassa OR74A

Neurospora tetrasperma FGSC 2509

Sordaria macrospora k-hell

Chaetomium globosum CBS 148.51

Chaetomium thermophilum var. thermophilum DSM 1495

Thielavia terrestris NRRL 8126

Thermothelomyces thermophilus ATCC 42464

Madurella mycetomatis

Sporothrix insectorum RCEF 264

Sporothrix schenckii ATCC 58251

Sporothrix brasiliensis 5110

Ophiostoma piceae UAMH 11346

Grosmannia clavigera kw1407

Phaeoacremonium minimum UCRPA7

Coniochaeta ligniaria NRRL 30616

Talaromyces stipitatus ATCC 10500

Talaromyces islandicus

Talaromyces marneffei ATCC 18224

Talaromyces atroroseus

Talaromyces cellulolyticus

Rasamsonia emersonii CBS 393.64

Penicillium camemberti FM 013

Penicillium antarcticum

Penicillium brasilianum Pbras_Allpaths-LG

Aspergillus terreus NIH2624

Aspergillus fumigatus

Aspergillus flavus NRRL3357

Aspergillus oryzae RIB40

Aspergillus clavatus NRRL 1

Aspergillus niger ASM285v2

Aspergillus nidulans FGSC A4 ASM1142v1

Aspergillus fischeri NRRL 181

Penicilliopsis zonata CBS 506.65

Elaphomyces granulatus

Byssochlamys spectabilis No. 5

Coccidioides posadasii str. Silveira

Coccidioides immitis H538.4

Paracoccidioides brasiliensis Pb18

Paracoccidioides lutzii Pb01

Trichophyton equinum CBS 127.97

Trichophyton interdigitale MR816

Trichophyton rubrum CBS 118892

Trichophyton mentagrophytes

Trichophyton verrucosum HKI 0517

Trichophyton tonsurans CBS 112818

Trichophyton violaceum

Trichophyton benhamiae CBS 112371

Trichophyton soudanense CBS 452.61

Nannizzia gypsea CBS 118893

Microsporum canis CBS 113480

Emmonsia crescens UAMH 3008

Emmonsia sp. CAC-2015a

Blastomyces silveriae

Blastomyces gilchristii SLH14081

Blastomyces percursus

Blastomyces dermatitidis ER-3

Histoplasma capsulatum NAm1

Helicocarpus griseus UAMH5409

Polytolypa hystricis UAMH7299

Emergomyces pasteurianus Ep9510

Ascosphaera apis ARSEF 7405

Uncinocarpus reesii 1704

Capronia epimyces CBS 606.96

Capronia coronata CBS 617.96

Phialophora attae

Phialophora americana

Cladophialophora bantiana CBS 173.52

Cladophialophora yegresii CBS 114405

Cladophialophora carrionii

Cladophialophora psammophila CBS 110553

Cladophialophora immunda

Fonsecaea pedrosoi CBS 271.37

Fonsecaea erecta

Fonsecaea nubica

Fonsecaea multimorphosa CBS 102226

Fonsecaea monophora

Exophiala spinifera

Exophiala aquamarina CBS 119918

Exophiala sideris

Exophiala xenobiotica

Exophiala dermatitidis NIH/UT8656

Exophiala oligosperma

Exophiala mesophila

Rhinocladiella mackenziei CBS 650.93

Cyphellophora europaea CBS 101466

Endocarpon pusillum Z07020

Phaeomoniella chlamydospora

Diplodia seriata UCDDS831v0.1

Diplodia corticola

Macrophomina phaseolina MS6

Neofusicoccum parvum UCRNP2

Coniosporium apollinis CBS 100218

Acidomyces richmondensis BFW

Rachicladosporium sp. CCFEE 5018

Rachicladosporium antarcticum

Hortaea werneckii EXF-2000

Baudoinia panamericana UAMH 10762

Pseudocercospora fijiensis CIRAD86

Pseudocercospora musae

Zymoseptoria tritici IPO323

Zymoseptoria brevis

Cercospora zeina

Cercospora beticola

Cercospora berteroae

Ramularia collo-cygni

Sphaerulina musiva SO2202

Pseudocercospora eumusae

Dothistroma septosporum NZE10

Aureobasidium subglaciale EXF-2481

Aureobasidium pullulans EXF-150

Aureobasidium namibiae CBS 147.97

Aureobasidium melanogenum CBS 110374

Elsinoe australis

Paraphaeosphaeria sporulosa

Stagonospora sp. SRC1lsM3a

Periconia macrospinosa

Epicoccum nigrum

Ascochyta rabiei

Pyrenophora teres f. teres 0-1

Pyrenophora tritici-repentis Pt-1C-BFP

Bipolaris victoriae FI3

Bipolaris maydis C5

Bipolaris oryzae ATCC 44560

Bipolaris sorokiniana ND90Pr

Bipolaris zeicola 26-R-13

Alternaria alternata

Exserohilum turcica Et28A

Stemphylium lycopersici

Leptosphaeria maculans JN3

Pyrenochaeta sp. DS3sAY3a

Parastagonospora nodorum SN15

Corynespora cassiicola Philippines

Clohesyomyces aquaticus

Xylona heveae TC161

Kuraishia capsulata CBS 1993

Nadsonia fulvescens var. elongata DSM 6958

[Candida] auris ASM118947v1

Clavispora lusitaniae ATCC 42720

Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

Sugiyamaella lignohabitans

Wickerhamiella sorbophila

Komagataella phaffii GS115 ASM174695v1

Komagataella phaffii GS115 GCA_000027005.1

Cyberlindnera jadinii

Cyberlindnera fabianii ASM320585v1

Wickerhamomyces anomalus NRRL Y-366-8

Wickerhamomyces ciferrii

Ogataea polymorpha

Ogataea parapolymorpha DL-1

Pichia membranifaciens NRRL Y-2026

Pichia kudriavzevii ASM76445v1

Brettanomyces bruxellensis AWRI1499

Hanseniaspora uvarum DSM 2768

Hanseniaspora guilliermondii

Hanseniaspora valbyensis NRRL Y-1626

Hanseniaspora osmophila

Hanseniaspora opuntiae

Debaryomyces hansenii CBS767

Debaryomyces fabryi

Candida parapsilosis

Candida albicans SC5314 Cand_albi_SC5314_V4

Candida tropicalis MYA-3404

Lodderomyces elongisporus NRRL YB-4239

Meyerozyma guilliermondii ATCC 6260

Hyphopichia burtonii NRRL Y-1933

Scheffersomyces stipitis CBS 6054

Spathaspora passalidarum NRRL Y-27907

Suhomyces tanzawaensis NRRL Y-17324

Millerozyma farinosa CBS 7064

Babjeviella inositovora NRRL Y-12698

Tetrapisispora phaffii CBS 4417

Tetrapisispora blattae CBS 6284

Naumovozyma dairenensis CBS 421

Naumovozyma castellii CBS 4309

Eremothecium gossypii ATCC 10895

Eremothecium gossypii FDAG1

Eremothecium cymbalariae DBVPG#7215

Lachancea dasiensis CBS 10888

Lachancea lanzarotensis

Kazachstania africana CBS 2517

Kazachstania naganishii CBS 8797

Kluyveromyces lactis

Kluyveromyces marxianus DMKU3-1042

Kluyveromyces dobzhanskii CBS 2104

Zygosaccharomyces rouxii ASM2636v1

Zygosaccharomyces bailii CLIB 213

Zygosaccharomyces parabailii

Saccharomyces kudriavzevii IFO 1802

Saccharomyces sp. 'boulardii' ASM129837v2

Saccharomyces cerevisiae S288C

Saccharomyces arboricola H-6

Saccharomyces eubayanus

Torulaspora delbrueckii

Vanderwaltozyma polyspora DSM 70294

[Candida] glabrata ASM254v2

Pachysolen tannophilus NRRL Y-2460

Saccharomycetaceae sp. 'Ashbya aceri'

Ascoidea rubescens DSM 1968

Lipomyces starkeyi NRRL Y-11557

Yarrowia lipolytica YALIA101

Tortispora caseinolytica NRRL Y-17796

Pneumocystis carinii B80

Pneumocystis jirovecii RU7

Pneumocystis murina B123

Schizosaccharomyces japonicus yFS275

Schizosaccharomyces cryophilus OY26

Schizosaccharomyces pombe 972h-

Schizosaccharomyces octosporus yFS286

Saitoella complicata NRRL Y-17804 Scomplicata_3.0

Protomyces lactucaedebilis

Neolecta irregularis DAH-3

Puccinia graminis f. sp. tritici 04KEN156/4

Puccinia graminis f. sp. tritici CRL 75-36-700-3

Puccinia striiformis

Puccinia triticina 1-1 BBBD Race 1

Puccinia coronata var. avenae f. sp. avenae

Puccinia sorghi

Melampsora larici-populina 98AG31

Microbotryum intermedium

Microbotryum lychnidis-dioicae p1A1 Lamole

Rhodotorula toruloides ATCC 204091

Rhodotorula graminis WP1

Leucosporidium creatinivorum

Mixia osmundae IAM 14324 Mosmundae_2.0

Wallemia mellicola CBS 633.66

Wallemia ichthyophaga EXF-994

Trichosporon asahii var. asahii CBS 8904

Cutaneotrichosporon oleaginosum

Kwoniella bestiolae CBS 10118

Kwoniella pini CBS 10737

Kwoniella dejecticola CBS 10117

Cryptococcus amylolentus CBS 6039

Cryptococcus gattii WM276

Cryptococcus depauperatus CBS 7841

Cryptococcus neoformans var. neoformans JEC21

Tsuchiyaea wingfieldii CBS 7118

Kockovaella imperatae

Tremella mesenterica DSM 1558

Naematelia encephala

Calocera cornea HHB12733

Calocera viscosa TUFC12733

Dacryopinax primogenitus

Piloderma croceum F 1598

Fibularhizoctonia sp. CBS 109695

Rhizopogon vesiculosus

Suillus luteus UH-Slu-Lm8-n1

Paxillus involutus ATCC 200175

Paxillus rubicundulus Ve08.2h10

Hydnomerulius pinastri MD-312

Pisolithus tinctorius Marx 270

Pisolithus microcarpus 441

Scleroderma citrinum Foug A

Coniophora puteana RWD-64-598 SS2

Serpula lacrymans var. lacrymans S7.3

Lentinula edodes

Gymnopus luxurians FD-317 M1

Moniliophthora perniciosa FA553

Moniliophthora roreri MCA 2997

Laccaria amethystina LaAM-08-1

Laccaria bicolor S238N-H82

Armillaria solidipes

Armillaria gallica

Armillaria ostoyae

Cylindrobasidium torrendii FP15055 ss-10

Hypsizygus marmoreus

Termitomyces sp. J132

Leucoagaricus sp. SymC.cos

Agaricus bisporus var. burnettii JB137-S8

Hypholoma sublateritium FD-334 SS-4

Galerina marginata CBS 339.88

Amanita thiersii Skay4041

Amanita muscaria Koide BX008

Hebeloma cylindrosporum h7

Coprinopsis cinerea okayama7#130

Schizophyllum commune H4-8

Pleurotus ostreatus PC15

Fistulina hepatica ATCC 64428

Plicaturopsis crispa FD-325 SS-3

Jaapia argillacea MUCL 33604

Pyrrhoderma noxium

Fomitiporia mediterranea MF3/22

Schizopora paradoxa

Neolentinus lepideus HHB14362 ss-1

Gloeophyllum trabeum ATCC 11539

Serendipita vermifera MAFF 305830

Serendipita indica DSM 11827

Sistotremastrum suecicum HHB10207 ss-3

Sistotremastrum niveocremeum HHB9708

Stereum hirsutum FP-91666 SS1

Heterobasidion irregulare TC 32-1

Peniophora sp. CONT

Rhizoctonia solani AG-1 IA

Botryobasidium botryosum FD-172 SS1

Tulasnella calospora MUT 4182

Wolfiporia cocos MD-104 SS10

Laetiporus sulphureus 93-53

Fomitopsis pinicola FP-58527 SS1

Daedalea quercina L-15889

Phlebiopsis gigantea 11061_1 CR5-6

Phanerochaete carnosa HHB-10118-sp

Trametes cinnabarina

Trametes versicolor FP-101664 SS1

Trametes pubescens

Trametes coccinea BRFM310

Dichomitus squalens LYAD-421 SS1

Ganoderma sinense ZZ0214-1

Fibroporia radiculosa

Gelatoporia subvermispora B

Postia placenta Mad-698-R

Grifola frondosa

Phlebia centrifuga

Exidia glandulosa HHB12029

Punctularia strigosozonata HHB-11173 SS5

Sphaerobolus stellatus SS14

Moesziomyces antarcticus T-34

Moesziomyces aphidis DSM 70725

Ustilago hordei

Ustilago maydis 521

Pseudozyma hubeiensis SY62

Sporisorium reilianum SRZ2

Anthracocystis flocculosa PF-1

Kalmanozyma brasiliensis GHG001

Testicularia cyperi

Malassezia globosa CBS 7966

Malassezia sympodialis ATCC 42132 ASM34930v2

Malassezia vespertilionis

Malassezia pachydermatis

Meira miltonrushii

Acaromyces ingoldii

Jaminaea rosea

Pseudomicrostroma glucosiphilum

Tilletia walkeri

Tilletia caries

Tilletia indica

Tilletia controversa

Tilletiaria anomala UBC 951

Tilletiopsis washingtonensis

Ceraceosorus guamensis

Violaceomyces palustris

Basidiobolus meristosporus CBS 931.73

Conidiobolus coronatus NRRL 28638

Allomyces macrogynus ATCC 38327

Catenaria anguillulae PL171

Paramicrosporidium saccamoebae

Rozella allomycis CSF55

Batrachochytrium salamandrivorans

Batrachochytrium dendrobatidis JEL423

Spizellomyces punctatus DAOM BR117