Statistics on protein trees

The protein tree pipeline is described at the following page.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Drechslerella stenobrocha 248

Arthrobotrys oligospora ATCC 24927

Dactylellina haptotyla CBS 200.50

Tuber magnatum

Tuber borchii

Tuber melanosporum Mel28

Talaromyces stipitatus ATCC 10500

Talaromyces islandicus

Talaromyces atroroseus

Talaromyces marneffei ATCC 18224

Talaromyces cellulolyticus

Rasamsonia emersonii CBS 393.64

Penicillium camemberti FM 013

Penicillium brasilianum Pbras_Allpaths-LG

Penicillium antarcticum

Aspergillus nidulans FGSC A4 ASM1142v1

Aspergillus niger ASM285v2

Aspergillus clavatus NRRL 1

Aspergillus terreus NIH2624

Aspergillus fischeri NRRL 181

Aspergillus oryzae RIB40

Aspergillus fumigatus

Aspergillus flavus NRRL3357

Penicilliopsis zonata CBS 506.65

Elaphomyces granulatus

Byssochlamys spectabilis No. 5

Paracoccidioides lutzii Pb01

Paracoccidioides brasiliensis Pb18

Coccidioides immitis H538.4

Coccidioides posadasii str. Silveira

Trichophyton equinum CBS 127.97

Trichophyton soudanense CBS 452.61

Trichophyton interdigitale MR816

Trichophyton benhamiae CBS 112371

Trichophyton mentagrophytes

Trichophyton violaceum

Trichophyton verrucosum HKI 0517

Trichophyton tonsurans CBS 112818

Trichophyton rubrum CBS 118892

Nannizzia gypsea CBS 118893

Microsporum canis CBS 113480

Blastomyces percursus

Blastomyces dermatitidis ER-3

Blastomyces gilchristii SLH14081

Emmonsia sp. CAC-2015a

Blastomyces silveriae

Emmonsia crescens UAMH 3008

Histoplasma capsulatum NAm1

Polytolypa hystricis UAMH7299

Emergomyces pasteurianus Ep9510

Helicocarpus griseus UAMH5409

Ascosphaera apis ARSEF 7405

Uncinocarpus reesii 1704

Phialophora americana

Phialophora attae

Capronia epimyces CBS 606.96

Capronia coronata CBS 617.96

Fonsecaea monophora

Fonsecaea erecta

Fonsecaea multimorphosa CBS 102226

Fonsecaea nubica

Fonsecaea pedrosoi CBS 271.37

Cladophialophora bantiana CBS 173.52

Cladophialophora immunda

Cladophialophora psammophila CBS 110553

Cladophialophora yegresii CBS 114405

Cladophialophora carrionii

Exophiala aquamarina CBS 119918

Exophiala spinifera

Exophiala dermatitidis NIH/UT8656

Exophiala xenobiotica

Exophiala sideris

Exophiala mesophila

Exophiala oligosperma

Rhinocladiella mackenziei CBS 650.93

Cyphellophora europaea CBS 101466

Phaeomoniella chlamydospora

Endocarpon pusillum Z07020

Thielaviopsis punctulata

Ceratocystis platani

Scedosporium apiospermum

Lomentospora prolificans

Verticillium longisporum vl2.denovo.v1

Verticillium dahliae VdLs.17

Colletotrichum graminicola M1.001

Colletotrichum higginsianum

Colletotrichum orbiculare MAFF 240422

Colletotrichum fructicola Nara gc5

Ustilaginoidea virens Assembly_for_version_1_of_the_Villosiclava_virens_genome

Acremonium chrysogenum ATCC 11550

Trichoderma gamsii

Trichoderma guizhouense

Trichoderma parareesei

Trichoderma virens Gv29-8

Trichoderma longibrachiatum ATCC 18648

Trichoderma asperellum CBS 433.97

Trichoderma atroviride IMI 206040

Trichoderma citrinoviride

Trichoderma reesei QM6a

Trichoderma harzianum ASM98886v1

Escovopsis weberi

Beauveria brongniartii RCEF 3172

Cordyceps militaris CM01

Cordyceps sp. RAO-2017

Cordyceps confragosa RCEF 1005

Cordyceps fumosorosea ARSEF 2679

Beauveria bassiana ASM168263v1

Stachybotrys chartarum IBT 40288

Stachybotrys chlorohalonata IBT 40285

Fusarium fujikuroi EF1

Fusarium verticillioides 7600

Fusarium graminearum CS3005v1

Fusarium pseudograminearum CS3096

Fusarium culmorum CS7071

[Nectria] haematococca mpVI 77-13-4

Fusarium oxysporum f. sp. lycopersici 4287 FO2

Neonectria ditissima

Ophiocordyceps camponoti-rufipedis

Ophiocordyceps australis OphauG2

Tolypocladium capitatum

Tolypocladium paradoxum

Tolypocladium ophioglossoides CBS 100239

Drechmeria coniospora

Hirsutella minnesotensis 3608

Purpureocillium lilacinum ASM165320v1

Metarhizium acridum CQMa 102

Metarhizium album ARSEF 1941

Metarhizium robertsii ARSEF 23

Metarhizium majus ARSEF 297

Metarhizium rileyi RCEF 4871

Moelleriella libera RCEF 2490

Pochonia chlamydosporia 170

Torrubiella hemipterigena

Claviceps purpurea 20.1

Hypoxylon sp. CI-4A

Daldinia sp. EC12

Eutypa lata UCREL1

Pestalotiopsis fici W106-1

Microdochium bolleyi

Pseudomassariella vexata

Rosellinia necatrix

Magnaporthiopsis poae ATCC 64411

Gaeumannomyces tritici R3-111a-1

Pyricularia oryzae 70-15

Diaporthe helianthi

Diaporthe ampelina

Coniella lustricola

Valsa mali var. pyri

Neurospora tetrasperma FGSC 2509

Neurospora crassa OR74A

Sordaria macrospora k-hell

Chaetomium thermophilum var. thermophilum DSM 1495

Chaetomium globosum CBS 148.51

Thermothelomyces thermophilus ATCC 42464

Thielavia terrestris NRRL 8126

Madurella mycetomatis

Sporothrix brasiliensis 5110

Sporothrix schenckii ATCC 58251

Sporothrix insectorum RCEF 264

Grosmannia clavigera kw1407

Ophiostoma piceae UAMH 11346

Coniochaeta ligniaria NRRL 30616

Phaeoacremonium minimum UCRPA7

Erysiphe necator

Erysiphe pulchra

Blumeria graminis f. sp. hordei DH14

Oidiodendron maius Zn

Amorphotheca resinae ATCC 22711

Meliniomyces bicolor E

Hyaloscypha variabilis F

Glarea lozoyensis ATCC 20868

Sclerotinia borealis F-4128

Sclerotinia sclerotiorum 1980 UF-70 ASM14694v1

Botrytis cinerea B05.10

Marssonina brunnea f. sp. 'multigermtubi' MB_m1

Diplocarpon rosae

Phialocephala scopiformis

Phialocephala subalpina

Rhynchosporium agropyri

Rhynchosporium secalis

Rhynchosporium commune

Cadophora sp. DSE1049

Rutstroemia sp. NJR-2017a WRK4

Rutstroemia sp. NJR-2017a BVV2

Rutstroemia sp. NJR-2017a BBW

Pezoloma ericae

Baudoinia panamericana UAMH 10762

Hortaea werneckii EXF-2000

Rachicladosporium sp. CCFEE 5018

Rachicladosporium antarcticum

Zymoseptoria tritici IPO323

Zymoseptoria brevis

Pseudocercospora musae

Pseudocercospora fijiensis CIRAD86

Cercospora beticola

Cercospora berteroae

Cercospora zeina

Dothistroma septosporum NZE10

Pseudocercospora eumusae

Ramularia collo-cygni

Sphaerulina musiva SO2202

Aureobasidium melanogenum CBS 110374

Aureobasidium pullulans EXF-150

Aureobasidium subglaciale EXF-2481

Aureobasidium namibiae CBS 147.97

Elsinoe australis

Diplodia corticola

Diplodia seriata UCDDS831v0.1

Macrophomina phaseolina MS6

Neofusicoccum parvum UCRNP2

Coniosporium apollinis CBS 100218

Acidomyces richmondensis BFW

Stagonospora sp. SRC1lsM3a

Periconia macrospinosa

Paraphaeosphaeria sporulosa

Epicoccum nigrum

Ascochyta rabiei

Pyrenophora teres f. teres 0-1

Pyrenophora tritici-repentis Pt-1C-BFP

Bipolaris zeicola 26-R-13

Bipolaris victoriae FI3

Bipolaris maydis C5

Bipolaris oryzae ATCC 44560

Bipolaris sorokiniana ND90Pr

Exserohilum turcica Et28A

Alternaria alternata

Stemphylium lycopersici

Parastagonospora nodorum SN15

Pyrenochaeta sp. DS3sAY3a

Leptosphaeria maculans JN3

Clohesyomyces aquaticus

Corynespora cassiicola Philippines

Xylona heveae TC161

Clavispora lusitaniae ATCC 42720

[Candida] auris ASM118947v1

Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

Sugiyamaella lignohabitans

Wickerhamiella sorbophila

Kuraishia capsulata CBS 1993

Nadsonia fulvescens var. elongata DSM 6958

Ogataea parapolymorpha DL-1

Ogataea polymorpha

Pichia membranifaciens NRRL Y-2026

Pichia kudriavzevii ASM76445v1

Brettanomyces bruxellensis AWRI1499

Komagataella phaffii GS115 ASM174695v1

Komagataella phaffii GS115 GCA_000027005.1

Wickerhamomyces ciferrii

Wickerhamomyces anomalus NRRL Y-366-8

Cyberlindnera fabianii ASM320585v1

Cyberlindnera jadinii

Hanseniaspora uvarum DSM 2768

Hanseniaspora osmophila

Hanseniaspora opuntiae

Hanseniaspora valbyensis NRRL Y-1626

Hanseniaspora guilliermondii

Debaryomyces hansenii CBS767

Debaryomyces fabryi

Candida albicans SC5314 Cand_albi_SC5314_V4

Candida parapsilosis

Candida tropicalis MYA-3404

Lodderomyces elongisporus NRRL YB-4239

Babjeviella inositovora NRRL Y-12698

Meyerozyma guilliermondii ATCC 6260

Suhomyces tanzawaensis NRRL Y-17324

Spathaspora passalidarum NRRL Y-27907

Scheffersomyces stipitis CBS 6054

Hyphopichia burtonii NRRL Y-1933

Millerozyma farinosa CBS 7064

Eremothecium gossypii ATCC 10895

Eremothecium gossypii FDAG1

Eremothecium cymbalariae DBVPG#7215

Tetrapisispora phaffii CBS 4417

Tetrapisispora blattae CBS 6284

Lachancea lanzarotensis

Lachancea dasiensis CBS 10888

Naumovozyma dairenensis CBS 421

Naumovozyma castellii CBS 4309

Kazachstania africana CBS 2517

Kazachstania naganishii CBS 8797

Kluyveromyces lactis

Kluyveromyces dobzhanskii CBS 2104

Kluyveromyces marxianus DMKU3-1042

Zygosaccharomyces rouxii ASM2636v1

Zygosaccharomyces bailii CLIB 213

Zygosaccharomyces parabailii

Saccharomyces arboricola H-6

Saccharomyces sp. 'boulardii' ASM129837v2

Saccharomyces kudriavzevii IFO 1802

Saccharomyces eubayanus

Saccharomyces cerevisiae S288C

Vanderwaltozyma polyspora DSM 70294

Torulaspora delbrueckii

Saccharomycetaceae sp. 'Ashbya aceri'

[Candida] glabrata ASM254v2

Pachysolen tannophilus NRRL Y-2460

Lipomyces starkeyi NRRL Y-11557

Tortispora caseinolytica NRRL Y-17796

Ascoidea rubescens DSM 1968

Yarrowia lipolytica YALIA101

Pneumocystis carinii B80

Pneumocystis jirovecii RU7

Pneumocystis murina B123

Schizosaccharomyces pombe 972h-

Schizosaccharomyces cryophilus OY26

Schizosaccharomyces octosporus yFS286

Schizosaccharomyces japonicus yFS275

Protomyces lactucaedebilis

Saitoella complicata NRRL Y-17804 Scomplicata_3.0

Neolecta irregularis DAH-3

Puccinia graminis f. sp. tritici 04KEN156/4

Puccinia graminis f. sp. tritici CRL 75-36-700-3

Puccinia striiformis

Puccinia sorghi

Puccinia triticina 1-1 BBBD Race 1

Puccinia coronata var. avenae f. sp. avenae

Melampsora larici-populina 98AG31

Rhodotorula toruloides ATCC 204091

Rhodotorula graminis WP1

Microbotryum intermedium

Microbotryum lychnidis-dioicae p1A1 Lamole

Leucosporidium creatinivorum

Mixia osmundae IAM 14324 Mosmundae_2.0

Moesziomyces antarcticus T-34

Moesziomyces aphidis DSM 70725

Ustilago maydis 521

Ustilago hordei

Sporisorium reilianum SRZ2

Pseudozyma hubeiensis SY62

Anthracocystis flocculosa PF-1

Kalmanozyma brasiliensis GHG001

Testicularia cyperi

Malassezia vespertilionis

Malassezia globosa CBS 7966

Malassezia sympodialis ATCC 42132 ASM34930v2

Malassezia pachydermatis

Acaromyces ingoldii

Meira miltonrushii

Pseudomicrostroma glucosiphilum

Jaminaea rosea

Tilletia controversa

Tilletia caries

Tilletia walkeri

Tilletia indica

Ceraceosorus guamensis

Tilletiopsis washingtonensis

Tilletiaria anomala UBC 951

Violaceomyces palustris

Trichosporon asahii var. asahii CBS 8904

Cutaneotrichosporon oleaginosum

Kwoniella bestiolae CBS 10118

Kwoniella dejecticola CBS 10117

Kwoniella pini CBS 10737

Cryptococcus neoformans var. neoformans JEC21

Cryptococcus depauperatus CBS 7841

Cryptococcus gattii WM276

Cryptococcus amylolentus CBS 6039

Tsuchiyaea wingfieldii CBS 7118

Kockovaella imperatae

Naematelia encephala

Tremella mesenterica DSM 1558

Calocera cornea HHB12733

Calocera viscosa TUFC12733

Dacryopinax primogenitus

Wallemia ichthyophaga EXF-994

Wallemia mellicola CBS 633.66

Piloderma croceum F 1598

Fibularhizoctonia sp. CBS 109695

Serpula lacrymans var. lacrymans S7.3

Coniophora puteana RWD-64-598 SS2

Suillus luteus UH-Slu-Lm8-n1

Rhizopogon vesiculosus

Pisolithus tinctorius Marx 270

Pisolithus microcarpus 441

Scleroderma citrinum Foug A

Paxillus rubicundulus Ve08.2h10

Paxillus involutus ATCC 200175

Hydnomerulius pinastri MD-312

Laccaria amethystina LaAM-08-1

Laccaria bicolor S238N-H82

Armillaria gallica

Armillaria solidipes

Armillaria ostoyae

Cylindrobasidium torrendii FP15055 ss-10

Termitomyces sp. J132

Hypsizygus marmoreus

Lentinula edodes

Gymnopus luxurians FD-317 M1

Hypholoma sublateritium FD-334 SS-4

Galerina marginata CBS 339.88

Leucoagaricus sp. SymC.cos

Agaricus bisporus var. burnettii JB137-S8

Amanita muscaria Koide BX008

Amanita thiersii Skay4041

Moniliophthora perniciosa FA553

Moniliophthora roreri MCA 2997

Fistulina hepatica ATCC 64428

Schizophyllum commune H4-8

Hebeloma cylindrosporum h7

Coprinopsis cinerea okayama7#130

Pleurotus ostreatus PC15

Jaapia argillacea MUCL 33604

Plicaturopsis crispa FD-325 SS-3

Serendipita vermifera MAFF 305830

Serendipita indica DSM 11827

Sistotremastrum niveocremeum HHB9708

Sistotremastrum suecicum HHB10207 ss-3

Gloeophyllum trabeum ATCC 11539

Neolentinus lepideus HHB14362 ss-1

Pyrrhoderma noxium

Fomitiporia mediterranea MF3/22

Schizopora paradoxa

Peniophora sp. CONT

Stereum hirsutum FP-91666 SS1

Heterobasidion irregulare TC 32-1

Tulasnella calospora MUT 4182

Botryobasidium botryosum FD-172 SS1

Rhizoctonia solani AG-1 IA

Fomitopsis pinicola FP-58527 SS1

Daedalea quercina L-15889

Laetiporus sulphureus 93-53

Wolfiporia cocos MD-104 SS10

Phlebiopsis gigantea 11061_1 CR5-6

Phanerochaete carnosa HHB-10118-sp

Trametes versicolor FP-101664 SS1

Trametes coccinea BRFM310

Trametes cinnabarina

Trametes pubescens

Dichomitus squalens LYAD-421 SS1

Ganoderma sinense ZZ0214-1

Grifola frondosa

Fibroporia radiculosa

Phlebia centrifuga

Postia placenta Mad-698-R

Gelatoporia subvermispora B

Exidia glandulosa HHB12029

Punctularia strigosozonata HHB-11173 SS5

Sphaerobolus stellatus SS14

Basidiobolus meristosporus CBS 931.73

Conidiobolus coronatus NRRL 28638

Allomyces macrogynus ATCC 38327

Catenaria anguillulae PL171

Paramicrosporidium saccamoebae

Rozella allomycis CSF55

Absidia repens

Hesseltinella vesiculosa

Lichtheimia ramosa

Lichtheimia corymbifera JMRC:FSU:9682

Rhizopus delemar RA 99-880

Rhizopus microsporus Rmicro_CBS_344.29_Allpaths-LG

Mucor circinelloides f. circinelloides 1006PhL

Mucor ambiguus

Choanephora cucurbitarum

Syncephalastrum racemosum

Bifiguratus adelaidae

Mortierella elongata AG-77

Mortierella verticillata NRRL 6337

Lobosporangium transversale

Rhizophagus clarus

Batrachochytrium dendrobatidis JEL423

Batrachochytrium salamandrivorans

Spizellomyces punctatus DAOM BR117

Rhizoclosmatium globosum

Piromyces sp. E2

Piromyces finnis

Anaeromyces robustus

Neocallimastix californiae

Gonapodya prolifera JEL478

Trachipleistophora hominis

Vavraia culicis subsp. floridensis

Nosema ceranae BRL01

Nosema apis BRL 01