5' upstream sequence
{"provisional":{"flourishes":{},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null}},"_messages":[]},"expect":[],"ref":{"style":[[0,""],[0,"color:#008000"]]}},"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only"}
..........aacgcaccccttgtcttgcgctgcctcaagcccgaatcctgagcctgcag
1 EHK20412-1 641,241 641,158 0 0 84
{"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only","provisional":{"legend":{"exons/Introns":{"flanking":{"label":"#008000","class":"ef","text":"Flanking sequence","default":null},"utr":{"label":"#cd6839","class":"eu","text":"UTR","default":null},"exon1":{"default":null,"label":"#1044ee","class":"e1","text":"Translated sequence"}},"_messages":[]},"seq":[{"style":[2,-17,1]},{"style":[1,-23,0]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"expect":[]}}
CGGGCCAGCCGTTGAGTAATGGCCGATTCGGAGAGCCATTATGCCTTCGACGATGGCCCC GATGACGAGCAGTCCATCATCTCT
Intron 1-2 641,157 641,006 152
{"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"utr":{"default":null,"text":"UTR","class":"eu","label":"#cd6839"},"exon1":{"text":"Translated sequence","class":"e1","label":"#1044ee","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"}},"_messages":[]}}}
gtatgtcgcaaaccagcacaccaag..........aagtcatgtctcttctttgccgcag
2 EHK20412-2 641,005 640,405 0 1 601
{"provisional":{"legend":{"exons/Introns":{"utr":{"default":null,"text":"UTR","class":"eu","label":"#cd6839"},"exon1":{"label":"#1044ee","class":"e1","text":"Translated sequence","default":null},"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]},-9,{"style":[1,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]},"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only"}
ACTCGAGGTCTTGAAGCCTTCAGTCGCAAGGTCACTGTGACGGCCAGCCAGCTCATGGGC CCAGCCGCAGAGGCCTCGGGAGCCCATTACCGCGCCGCCTTGGCAGAGGTTCACAAGCAG ATGAAGCGACCCAGCGTGCAGCGCGGCATGTTCTCCATGGCCCGGTCCAGCCCTACCGAA ATTGTGCGGTCCAAGCTGTCCACGGCCGAGATCCAGCACCGCGCCCTCACCCACCTGCCC GACGAGCTGCTGTCCAACATCCCCGAGCACCAGAACGCCTATTCGCTGTTCCAGGGCTTC CAGGCCAGCTTCCCCGAGTTGGCGGAGGATGGGAAGAAGCACCGCCGGCGGCCGTCGAGG GGCAGGAAGCTGCTGGAGGAGGGAGAAAACACCCCCGCAACGCCCAACAAGCTGGCCCAG CTCAAGAAGGAAAAGACGTCCATGGTGCACGAGCTGGAACTGCTGGGGGTGCGCAAGAGC ATGGTCAGCTGTGAGATCCGCGAGATAGACAACAAGATTGCCAATCTCTACGGCATGCGT AGGATTGTGCTCGAGAGATTGGCGGGCTTTGAGCAGGACGAGGCGACGCTCGAGCACGAT G
Intron 2-3 640,404 640,281 124
{"provisional":{"seq":[{"style":[1]}],"flourishes":{},"legend":{"exons/Introns":{"utr":{"class":"eu","label":"#cd6839","text":"UTR","default":null},"exon1":{"text":"Translated sequence","class":"e1","label":"#1044ee","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"}},"_messages":[]},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}},"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only"}
gtaggtttttgaacccatgccccag..........ttgtcttttggttgccccggtgtag
3 EHK20412-3 640,280 639,262 1 0 1,019
{"provisional":{"legend":{"exons/Introns":{"utr":{"default":null,"text":"UTR","label":"#cd6839","class":"eu"},"exon1":{"class":"e1","label":"#1044ee","text":"Translated sequence","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]},-15,{"style":[1,-58,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]},"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only"}
TCATGGACCTTGAATTGAAAATCGACGAAGTCCAAGCCATTGTCGACGAGGCCGAGGAGA TTGCTCGCAACACTGCCACCAAGGATGAGCGAGATCTAGTGGGCGATGCCGACGACCACG ACCCCGAATTCATGTCAAAGTCCGTCTATGAGAAGCTACCCGCAACCGACAACAAGCAGC GCAAGACGAAAAAGGTGCACCGTCGGAAATCCATGCCCATTCTGCACGAGCACTTTGCGC CAGGATCCAACATCCGTGAAATCCGAGCCCATCGCGATACAATTACGGCCATGGACTTTG ATGCGCCGTTCGGCACCTTGGTTACTGCCGCTCTGGACGACACTGTCCGAGTCTGGGATC TGAATGCCGGGCGTTGCATGGGCTACCTGGAGGGCCACACGGCCTCGGTGCGTGCTTTGC AGGTCGAGGATAACATTCTAGCTACCGGTTCTATGGATGCCACCATCAGGCTATGGGATT TGAGCAAGACGCACTACAACCCTCAAGGCGGCAAGGACGTTGGCGATGACGACGAGGACG CTATTGCTTTTGAACACCCCGATGCGCAGCCCATCGAGCCGCCGGAGGGCAGCATGGACG ACTGCGCTCTCTTTACGCTATCATCTCACGTCGACGAAATCACCGCGCTTCATTTCAGGG GAGATGTTTTGGTTTCTGGCTCAGCAGATAAGACGATCCGGCATTGGGACTTGGAAAAGG GCCGCTGCGTTCAGACGCTCGATGTCATGTGGGCGGCTGCTCAGGCATCGGCCATCGCAA CGACCGATGACACCTGGAGACCGACTGGCCGAGCCCAGGGAACGACGGCCGACTTTGTTG GTGCCTTGCAAGTGTTTGAATCGGCGCTGGCATGCGGTACTGCCGACGGCATGGTCCGCT TGTGGGATCTCCGAAGCGGCCAGGTTCACCGCAGCTTGGTGGGACACACCGGCGCCGTGA CATGTCTGCAGTTTGACGATGTACACCTAGTGACGGGCAGTTTGGACCGAAGCATCAGA
Intron 3-4 639,261 639,187 75
{"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only","provisional":{"seq":[{"style":[1]}],"flourishes":{},"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"intron":{"class":"ei","label":"#aaaaaa","text":"Intron sequence","default":null},"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"}},"_messages":[]},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtaagcctatccgtccctttctatc..........tcgactaacaacccaccttgtacag
4 EHK20412-4 639,186 638,956 0 0 231
{"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"label":"#1044ee","class":"e1","text":"Translated sequence","default":null},"intron":{"default":null,"text":"Intron sequence","class":"ei","label":"#aaaaaa"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]},-2,{"style":[1,-50,0]}]}}
ATATGGGATCTCCGAACCGGATCCATCTACGACGCCTACGCCTACGACAACCCCGTCACC AGCATGATGTTTGATGCGCGACGGATTGTCAGTGCGGCCAGCGAGGACGTGGTCAAGGTG TACGATAAGGTCGAGGGACGGCAATGGGACTGCGGAGCGGGCATTGCCGCGTCTGAGGGC GCCAAGAATGCCGCCATCGTCGAGCGTGTACGTGTTAGAGACGGCTACCTG
Intron 4-5 638,955 638,291 665
{"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only","provisional":{"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"text":"Translated sequence","class":"e1","label":"#1044ee","default":null},"intron":{"label":"#aaaaaa","class":"ei","text":"Intron sequence","default":null},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[]}}
gtagagggtaggcgggacggcattg..........tatcacgaccgatgcgccttccaag
5 EHK20412-5 638,290 636,893 0 0 1,398
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"label":"#cd6839","class":"eu","text":"UTR","default":null},"exon1":{"text":"Translated sequence","class":"e1","label":"#1044ee","default":null},"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"flanking":{"default":null,"text":"Flanking sequence","class":"ef","label":"#008000"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]},-22,{"style":[1,-17,0]}]},"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only"}
CCATCACAACCAACGGAAACAGATCTAAAAGCACTCGCGATGCAGGAATTACTACACCGC CAAGCCCATCTGCTCATCAAGTTACACGAATCCCTGCATCAGAATACAGACGCCGGCGTG GATGAGGAATTGCTACGGACAAGGCTGGATGACCTTGCGTCGGTCTGCATGACGGCGTTT TATGCGTATCGGTTCGATTTGTTGCCGTATTGCTGGAGATGGATATATACAGATACATTG ATTCTCATATCATATTACGCCATTCTACAGGCTGCTCGACGGGATTCGTTTGAAGAGAAA GTCATGGATCAGGTAGTGGAGAGTCTGGACAGAGCACTTATAGTAGCCGGCGGCGCAGGA AAGCCCCTGGGAAAACAATGGATCGAAAAGACACTGGATCTACTCAGCCGTTTTTGGGAC GAAACAGAAACATCCGAGGAAGAAACTCAACGGCCGCCAAAGCGCATTAAGAGAGACGCA ACCTTTTCTACTTACGAACCATTCGATCGGCCAAGTCTCTCCGCGGAAAAGACATGTCCG CGATATGAGAACTGGACGTTGGAAAAGTTTGAAAAGTACATGAATGAGGAGAGCTCGGGT AAACCGCTGCCCATTGTCTTTACTGACTTGACGAGGGAATGGCCGGCGTTTTCTGATATG CCCTGGAATAGCCCCGAGTATCTCCTCTCTAGGACATTTGGCGGGAGGAGGCTCGTCCCT ATTGAAATTGGACGTAGTTACGTCGATGAGGGCTGGAGCCAGGAATTAATCCAATTCAAA CACTTTCTCGCAAAATACATCGACCCAAGCATCACTTCCTCCCTCGACGCAACACCCACA CAGGCCGACGAGAAGCTTCAGCCCGAAAAAGTCGGCTATCTCGCCCAGCACAACCTCTTC CAACAAATCCCCGCGCTGCGGAACGACATCCAGGTCCCCGATTTCTGCTGGGCCGACGTC CCGCCCCATCCTACGGACCCTACCAAGGATCAGACGCCGGTGCAAGTCCCTCAGTTAAAC GCGTGGTTTGGCCCTGCAAAGACGATTACGCCGCTTCATACGGATGGATATCATAATTTG TTGTGTCAGGTTGTTGGGACGAAGTATGTGAGGTTGTATTCGCCTGAGGAGACGGGACGG CTGCGGCCTAGAGGGATGGAACATGGTGTTGATATGAGTAATACGAGTGAATTAGACATT GGCGTCTTGGAAGGCTGGGATGAGGATGAGAACGAGGACGGCGAGAATGATTGGGAGAGT ATTCGGAAAGAGTTGAAAGACGTTCCGTATTGGGAGACGATACTCAACCCGGGAGATACC CTGGTGATTCCCATCGGGTGGTGGCATTACGTCCGGAGTTTGAGCATCAGCTTCAGTGTT AGTTTCTGGTGGAATTAG
3' downstream sequence
{"url":"/Trichoderma_virens/Component/Transcript/Exons/exons?g=TRIVIDRAFT_77370;r=800X0P+0636893-641241;t=EHK20412;db=core;time=1743911249559.559;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#008000"]]},"expect":[],"legend":{"exons/Introns":{"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"},"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]}]}}
accaagcatcaaatcacgatcacaaacactttcggggttaacacctttgt..........
Trichoderma virens (ASM17099v1) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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