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Summary
Sequence
Protein Information
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- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
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Transcript: CBQ72644 sr13325-1

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Description

related to HDA1-histone deacetylase A

Location

Chromosome 5: 235,809-238,197 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 13 domains and features.

Gene

This transcript is a product of gene sr13325 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
sr13325-1	CBQ72644	2214	737aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6ZZG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........tcccgaggccaggtcggcctccgcagcacgccgacaagcaaactctcgac
1	CBQ72644-1	238,197	237,735	0	1	463	ATGTCAGGTCCATCGCGTTCGCCCGCCATTCCTCGCAGGGACGAGCCGATCGAGATCGAC GATGATGATGAAGCGATCGCAGCTATCCCGTCGACTAACCACGCGGCAGCAGCCTCTTCC TCGACCTCCTTGCGCGACGTAACACCGGCCATGTCGGTCGAGACCGGCTCCAGCAGCAGC CACGATCCCATCAATGGATTCGTCAACGGCAATGCTGACCCGCAATCCGAACTCGATCGA TATCGGACGGGCTACGTCTATTCCTCGGAAATGATGCTGCACGTAAATCCTATCGATCGC GATCATCCCGAGAGGCCGTTGCGCATCTGGAAGATTTATCTCAAGTTCAAACACAGAGAC CTCTTCCAGCGCATGAAGCGGATTAACATTCGCGAAGTGGCTGAGGACGAGGTATTGCTC GTCCACGACAAGGGCATCTGGGACGGTGTCAAACGCTCAGCAT
	Intron 1-2	237,734	237,649			86	gtaagttgatttgcggttgtgctcg..........ttgcttctgttgcgactcgacacag
2	CBQ72644-2	237,648	236,011	1	1	1,638	TGGTGCATCCGGACCTTCTAAAGGAACAAGTCTTGATGCTGGAGAGCACGAGCTCCCTGT ACGTCAATGAGCACTCTGCCTATGCCGCACGACTGTCGTGCGGTGGTGCCATCGAGCTGT GCGACGCCGTCGCCGCAGGCCGCATCAAGAATGGATTCGCCATCGTCCGGCCACCGGGCC ACCACGCAGAACCCCACAAGAGCATGGGCTTCTGCTTTTTCAACAATGTGGCGGTGGCGA CCCGGCACGTAATGCGACAGCACGATCATATCAAGAAGGTACTCATCCTCGACTGGGACG TGCACCACGGCAACGGGACGCAGCGAGCCTTCGAGGACGATGGAGATGTCCTATACATCT CGCTGCATCGATACGACGAGGACGGCAGCTTCTACCCGGGTTCGACCTACGGGCACTACG AAAGCGTCGGTGTAGGCGCGGGCGAGGGTAAGTCTGTCAACGTGCCATGGCCGGCACCTG GCATGGGCGATGCCGACTATCTGTACGCGTTCCACCATCTTGTCATGCCGATCGCCCACG AGTTCCAACCGGATCTCGTCATCGTCTCCGCGGGCTTCGATGCAGCCGACGGCGATCCGA TCGGACTCAACAAGGTCTCGCCGGGAGGCTTTGCGCAGATGACGCATCTTCTCACCTCGC TCTGCCAGGGCAAGGTCGCCGTGGTGCTCGAAGGCGGTTATAATCCGGATGCCGTGGCCA ACAGCGCCCTCGCCGTCACCGAGGTGCTCTTATCGCTCAACACGGCCGCACCTCGCGAGA CTGCGGCTTGCTCCATCGCCGCCAACACAGTCCACGAAGTGCGACGCCATCATGCGAAGC ATTGGAAATGTCTCCGCGCGTCCGACCTCGAAGCTGATGATGTGGACCGCGCTGCACCCA ACCCTCCCCCTTCGGTCGACGCGATCGAGCTGCTCGCGACATATCGCAACACTGTCGTCG CAGAAGAGTACGACCTGATGGAGGTGCCGCTCTACGACAGTCCACACAGCGACTTTGGCG GCCATGCGCTTTGTTCCGAGGGCATCCTCGACCAGTTCTCTACCATTATCTTTTTCGTCC ACGATATGGGCAACTGGCGCTCCGAGCGGCCGCGATCGTCGTCGGCTTACGATCAACTGG CGATCCAGCTCATCGACGCCTCCAAGTGCGTCATGGAGTACGCACGTTCGCGCGGCTACG GTCTGGTCGACGTCAACATCGTTCGGCAATTCTCCACGACGAATCCCATCCTTCCCGAGG GCGCCCGAGATCTGGTTCAACACGGTGATGTCGCAGGAATGGAGCAAGCTCTGAAAGCAG TTGCGTTCCTCTGGGACAACATCATCTCGATCGCAGACTCCTCGAGGCAGCCCTGCAACG TGGTGTTGATGGGACTCGGAACGGGCTGCAACGTCTTGACGCAGTTCATCGACAAGAGGG AGGCCAAGTCGCGCGTCAAGGCGGTGGTCAACGTGGTAGGCTACGGCAAGATGCCCAGCA TTTCGGTGGCTGCGGACCTCGAGACGAAAAAGTGGTACTATAAGCACAGCAAAGTTCTTG CGCCCGCGGACCACCGCCATCTGATCGAACGAGGCGACGCTGCGCCGCTCAAGAGGTACG GCAGGATCGAGCCAATCC
	Intron 2-3	236,010	235,922			89	gtaagtatttcccgtttggcacgca..........cttgcttgaccgccatcgtcgacag
3	CBQ72644-3	235,921	235,809	1	0	113	ACAATATGGCTCCGATCAACATGCTCAGCGCGAACATGGCCAAAATCGAGGCCTTTGTCG AAAAGAAGCTGGGCGCAGCAAAGAGATCCTTGGCTGCCAGCACTGTTGCCTAG
	3' downstream sequence						cctctgtttcgccggtctccgatgccacagcaacggcagcagcacgattg..........

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