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    Transcript: SPCC1259.15c.1 ubc11

    Description

    ubiquitin conjugating enzyme E2-C, Ubc11/UbcP4 [Source:PomBase;Acc:SPCC1259.15c]

    Location

    Chromosome III: 1,058,486-1,059,833 reverse strand.

    About this transcript

    This transcript has 5 exons, is annotated with 11 domains and features and is associated with 13 variant alleles.

    Gene

    This transcript is a product of gene SPCC1259.15c Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    ubc11SPCC1259.15c.11031176aa
     
    Protein coding
    		O00103 -Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
    Markup
    • loading
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........aaatctatataatgatataaaattggactataatttgatatccggttttc
    1SPCC1259.15c.1:exon:11,059,8331,059,64302191 
    GTTTACTTGTGTACATTAGCACATGTTGTGTTGTGTTTATAACTTACTCTCCTACCACCA
CGTACTCATTGAGAAACTACAGTAACAACTTGAGGAATGGATTCTGATATGCAAAACCAG
AACCCTCATACTAATTCTAAAAACTCTTCTTCTGCTGGCATGGCTGTTGACGGTCATAGC
GTTACAAAACG
     Intron 1-21,059,6421,059,59548 
    gtaaaaaataaacagtttttaggaaaaaagtctctaatgcatttgtag
    2SPCC1259.15c.1:exon:21,059,5941,059,5672028 
    ATTGAGAAGCGAATTAATGAGTTTAATG
     Intron 2-31,059,5661,059,51750 
    gtttgtaataagcttttttactttgttattaactagggttttatgactag
    3SPCC1259.15c.1:exon:31,059,5161,059,4270090 
    ATGTCCAATACTCCTGGAATTAGTGCGTTTCCAGATTCTGATTCTAACCTGCTACATTGG
GCTGGCACAATTACCGGCCCAAGCGATACG
     Intron 3-41,059,4261,059,258169 
    gtatgacttttattttgaaagctta..........catacgactaacgtaacgaaaatag
    4SPCC1259.15c.1:exon:41,059,2571,059,02202236 
    TACTATGAAGGATTGAAATTTAAAATTTCAATGTCATTTCCAGCTAATTACCCATATTCC
CCTCCAACTATCATTTTTACTTCACCAATGTGGCACCCCAATGTCGATATGAGTGGAAAC
ATATGTTTAGACATTTTAAAAGATAAATGGTCAGCAGTCTATAACGTACAGACAATTTTG
TTATCTCTACAAAGTCTGCTGGGTGAGCCAAACAATGCTTCTCCCTTGAATGCTCA
     Intron 4-51,059,0211,058,97250 
    gtatgttgaaaatatctcatttaccttttttgattattaacaattcttag
    5SPCC1259.15c.1:exon:51,058,9711,058,48622486 
    AGCTGCAGAATTGTGGAGTAAAGACCCTATCGAGTACAAACGTCTTTTAATGCAGAGATA
TAAAGAAATCGATGAAATTTAGTTAGGCCGGTCTATTTCATACTCATTTTCATTTCTGTT
TAGTCATATGGATTTTCTTTTCCTATTCAATGCTTGAAAAAATGTCTTTAGTTAAACTTT
CTTCATTGATAATGGAAGTTGAAATTATTTCATCTCATCGATTAAGCAATTCCTTCATGC
AATGCCACAACCTCCTGAAAACCACCGAATGGTTTTTTAAGGACCGTCTATCATTATTTA
GTTCCAGAAGTTGAAGTTGTTATTATGATGCTCGATTAAAGCTATTCTTGTTTAATGCAT
TCCGTTAATGCAGTCGTTTTTTTAGCTTTCCGTTAGATTATAATACTATTTTATTATTAT
TGATTCTCAATGTCATTGTGTTATGTATTATCGCAAGACAAGTATCAATGTTATGTTGTG
CCTGAA
    3' downstream sequence 
    tttttttctgattagtaataggactgtatatacagcctaatatttgtatt..........

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