Schizosaccharomyces pombe (ASM294v2)
Description

U5 snRNP complex subunit Spf38 [Source:PomBase;Acc:SPBC1289.11]

Location
About this transcript

This transcript has 6 exons, is annotated with 35 domains and features and is associated with 15 variant alleles.

Gene

This transcript is a product of gene SPBC1289.11 Show transcript tableHide transcript table

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
spf38SPBC1289.11.11361340aa
 
Protein coding
O94620 -Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........atttatttatactgtttaaacgaattttaaatggcttccatgagaagggt
1SPBC1289.11.1:exon:14,404,2924,404,60500314
AAATTTTTAGGGATTTTGCCTGTAATCAAAATGTTGTTCATATAAATTCTACTTTAAGTC
CTGTTTATAGGAATGAGCTCATCATTCCTCGTTATTTGAACACCAAAGAAAAGTCCGATT
TATTGGTATTTTGGTTGTGACAGAAACCCCTGCGACGATTGTCGATCCGTTTTATATATT
TTCCACTCCCGTCCCTGCTATTCATTTTACGTTCTAATTCTGAAAACTGTCAATCAGAAA
TTGCAGTTATTATATATAGTAAACTGGAAATGGATAAACGAAAGGAATCGGAGAGTGCGA
CTAATGGACATTTA                                              
 Intron 1-24,404,6064,404,64641
gtatgttcgattgctaaaaaaacatgcactaatataaatag                   
2SPBC1289.11.1:exon:24,404,6474,404,75100105
GTTAAAAGAATTAGAATCCAAGATTCTAGCTTAATAACGGAGGGTTCTGTATTGCAACGA
ACATCTGATCTCAATGTTCCAAACCTACAGATGTTTGGGCATACG               
 Intron 2-34,404,7524,404,78938
gtatggttgtattgaaataaatcatactaacgctttag                      
3SPBC1289.11.1:exon:34,404,7904,404,8620173
GCTGAAGTTTTAGTCGCCAGGTTCGATCCTTCTGGATCATACTTTGCTTCTGGCGGTATG
GATAGACAGATAC                                               
 Intron 3-44,404,8634,404,91149
gtaagtgcagctgtaattaaaatgttgatttataataactgtggtttag           
4SPBC1289.11.1:exon:44,404,9124,405,17110260
TTCTTTGGAATGTGTTTGGTGACGTTAAAAACTACGGAGTATTAAATGGCTGCAAGGGAG
CCATAACTGATTTACAGTGGAGCAGGGATTCACGCGTAGTTTACTGTTCTTCCTCCGATA
CACACCTCATGTCTTGGGACGCTGTCTCTGGTCAAAAAATCCGGAAGCATAAAGGCCACG
CTGGCGTGGTGAATGCTTTAGACGTTTTAAAAGTTGGTTCCGAACTTCTGACTTCTGTAA
GTGATGATTGTACTATGAAG                                        
 Intron 4-54,405,1724,405,21645
gtatggatattgttattaaaatatggaatagttactaaatttaag               
5SPBC1289.11.1:exon:54,405,2174,405,46001244
GTATGGGACTCGCGGTCAAAAGACTGCATAAAAACAATAGAAGAAAAATATCCCTTAACG
GCTGTCGCAATAGCGCAGCAAGGAACCCAAGTTTTTATCGGTGGTATTGACGGAGCTATT
AAAATCTGGGATTTACGAAACAATCACTGCTCGCATGTTCTGAAAGGGCATAAAGATATC
ATTACTAGTTTGGCTATATCTAAAGATGGATCTAGCTTACTTTCTAATTCTATGGACAAC
ACGG                                                        
 Intron 5-64,405,4614,405,52161
gtatgctaattttttttgggtgttt..........gtactaatgctattttaatttatag
6SPBC1289.11.1:exon:64,405,5224,405,88611365
TTCGAATATTTGATGTAAAACCTTTTGCTTCTGCTCAACGACAGTTGCAAATTTTTGAAG
GAGCTATTCACGGACAGGAGCATAATTTGTTAGGTGTTGCCTGGAGTCGTAATTCACGAT
TCGTTGGTGCTGGTAGCTCTGATAAAAACGTATATGTTTGGTCAGCCACAGGCGATTTAC
GTTATGTATTACCCGGACATGAGGGTTCAGTAAATCACGTTGACTTTCATCCACATCAGG
ACATCATTCTTTCATGTTCCTCAGATCGAACAATATTTCTTGGGGAATTGAATTAATTTT
TATTTCATGAATAATTTTTCAATAAACATTAAATACTATTAAAATTTTCTGTAGAACTTA
TTATT                                                       
3' downstream sequence
tgacgatcttagttgtcaagcctgttataattcctataactacaagtttc..........