Puccinia graminis (ASM14992v1)
Description

hypothetical protein

About this transcript

This transcript has 10 exons, is annotated with 27 domains and features and is associated with 1 variant allele.

Gene

This transcript is a product of gene PGTG_14760 Show transcript tableHide transcript table

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
PGTG_14760/EFP88555EFP885552318610aa
 
Protein coding
E3KW80 -Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ttatgtaagctcatccttcgggggtcaccgataggtggttgttgtatgta
1EFP88555-139,98540,40402420
GCATGACGTCATCGCCGCTGCTGGACTTCGATGACCCTCTTGCCTCGCAGAGCAGGTCAA
CTTGGTCAACAACATTCTTCTTGCCATCCGATTCGTGAACTCCAAGCTCATCGACTCAGC
TGAACAACACATGGCTGCGACCCCGATTAGCTTATGGGCACCCAGCCCTGACACTGGCGA
AAGAGGAACGGCCATCAAGCTCGACTCCAACGGAAAGGGCTCGATCGTCTATGCCGCCGG
AAGGTCGATTTTCATTAAGAATCTTGATACTCTGGAATCCGTGTCTTACTCAGGACATGT
CCGACCGACCACTGTTGCCAAATTCGCACCCTCCGGGTTCTACGTAGCATCCGGTGATTC
GGCTGGTAGTGTAAGAGTCTGGGATATAGCAGGCGACGAGCAGATCTTGAAGGTGGAAGT
 Intron 1-240,40540,47773
gtaagcctggttccctttgcacgat..........gaaagaatatcctcatggcctcaag
2EFP88555-240,47840,57922102
AAAAGCTATCTCGGGAAAAATCAATGACCTTGCTTGGGATGCCGAAAACGGGGGGAAACG
TATTGTAGCTGTTGGCGAAGGAAGGGAGCGTTTTGGTCATGC                  
 Intron 2-340,58040,64465
gtgagtactgcttttatagcttttg..........ctgattttttttctcttaactgcag
3EFP88555-340,64540,7432299
ATTTACCATAGATGGTGGGAATTCCGTAGGTGAAATTGCCGGTCATTCAAAAACTATTAC
GAGTGTTTGCGTCCGTTCAGCCAGACCGTTCCGGGCAGT                     
 Intron 3-440,74440,84299
gtgagtacttctacatcccttaacc..........tgggacgtattcctgattcatccag
4EFP88555-440,84340,8692227
TACAGGGAGCGATGATACAACCCTAGT                                 
 Intron 4-540,87040,970101
gtgggtcttcacctgcttgacttga..........ctatcgcgccatgcctttttttcag
5EFP88555-540,97141,27622306
CTTCTTCAATGGTACACCATACAAGTTCTCAAAGACGATTCGTACCCATTCGAGATTCGT
TCAAACAGTTGAATATGCCAAAGACGGTTCCTTGTTCGCATCTGGAGGCTCTGACTCCAA
GCTTTTTATCTACGATGGCTCCACGGGGGATACTATCTGTCAACTTGGTGGAGAAGATGC
GGCCGAGAAACACACCGGGACCGTGTACTCGATTGGCTGGTCTAAGGCACATCCGTCGAC
GCTTGCTTCTTTCTCAGCGGATGGGAGGGTTATGAGGTGGGATGCATCGACCCAAAAACA
CGTAGG                                                      
 Intron 5-641,27741,35983
gtaatgcgttctcccttttaaaatt..........gaccaactcgacgctcgattgaaag
6EFP88555-641,36041,50720148
AACGTGGAAATTAGCAGATTCACCCAGTCCGGAGCAGCAATTAATTGGAGGGACATGGCT
CGAAGGTAATCGACTAGTCTCGCTAGCTTATAATGGCGATCTCACCATTCTTGACGATAG
ACAGTCTGAACCTGTCAAAAAGATTTAT                                
 Intron 6-741,50841,57871
gcaagtatcaatattcaccatcacg..........taccgcttttcatctttgatttcag
7EFP88555-741,57941,80802230
TCTTGTCAAAAAGGCATCATCGCGGCTGCGAAATGTCCCAAAAGCTCGGGGATATTTGCC
GGTGATCACTCCGGGAGAGTCTTCCACTACTCGAATGAAGGTGTCTGCAAGCCGGTCGGA
GGATCAGCATCATCGAAAATTATAGGCTTATCTACTTCGCAAAACAAAGTGTTTTCGATC
AGCATGGATGATTCTGTGAGGGAAATAGATCCTTCAGAAGCTGCTTACAA          
 Intron 7-841,80941,89486
gtactcctttatgctctttctttct..........gactggaattacttgactcgtttag
8EFP88555-841,89542,08720193
TACCAATGTTGCAGTTCCTTTACCAGCACAAGGAAAAGATCTCTGCGCCCGTTCAACTGA
CAACGTTATCCTAGTCATCACAGCAAATGAAGCTAGGTTGATTGAATCCGGCAATTCTTT
AACCACGATACCTCTCGATTATAATGCAACCGCTTGCGCAATATCTCCAAAATTCGCGGC
CATTGGTGCAGCT                                               
 Intron 8-942,08842,18396
gtatgttttttgtgcaagtttcttg..........ttaaaatctgccctggcgattgtag
9EFP88555-942,18442,50400321
GACGGGAAAGTGTACGTTTACGATGCGAGTTCGAAAACACTGAAATCCTCAGTAACTTTA
TCCAAGAACATTTCTTCGGTGACGTGCATGGCTATCAGTCCAGATGAGAAACTTCTTGCA
GTGGGAGAACAAAACGGGAAGATCATGATCTATGAACTATCTGGAGAATACCCAGTAAAA
ATTTCTCAGTGGTGCTGGCATACGGCTAGAATCATGAGCTTCGATTGGTCTGCTTGTTCG
GCTTTCTTAGCCTCCTCATCCTTAGACACGAATATCTATGTTTGGAGTGTCGCCAAACCA
ACCAAAAACATCCCAATTAAG                                       
 Intron 9-1042,50542,56965
gtatgtgcatttacgttttcttttg..........tcaagctaacatcataaactatcag
10EFP88555-1042,57043,04101472
AACGCGCACGTGGGCGGAACAACGGAAGTTATTTGGGAGGCTGAAGGCAAATTGTTATCT
TGTGGATCCGACGGGGCCATCCGAAAGTTTTCAATCAAGTTAGACAGTCTCACATGAATA
ATGATAACAAAATCAGTCCACTCATCACTTGGGTGTGATTCGAAAAATAAAGAGAAGTCG
TTCTTTATCTTCTACACCACTGCGCCAAACCATGGCATAACAGTGATTGGTGCACCTTCT
TCTTTCTTAGTAGTGTGTATACATAGAGATGTACCCTTGAAGGTTATCTCGCATGGTTTC
ATGGGGAGATCACCAAAATTGACATGAGTTGTTGTGCTGATTCAGGCTGCTGAACAAGAG
CTGAAAATCCAAGAGATGTTGAGCCAAAGGAGAATTTGATGGGTTTTCGAGAAGGGAGCT
GTAGATTTCATAGGCTTTGTTACAGAGATTCACAGATTCCGGGGACCGATTG        
3' downstream sequence
ggcttccaagtctggcagcccagtagatatttttgatgggatctgtgaca..........