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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: EFP85475 PGTG_11831/EFP85475

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Description

hypothetical protein

Location

SuperContig supercont2.34: 291,217-295,077 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 29 domains and features and is associated with 27 variant alleles.

Gene

This transcript is a product of gene PGTG_11831 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
PGTG_11831/EFP85475	EFP85475	3685	1030aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E3KMF0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........cataatcacaagggagacaacctcgaggctgctacgtttacccttgttga
1	EFP85475-1	291,217	291,697	0	0	481	CCATCTCTTCCAAACAACCACTTCCTCAACTTCAACTATCAGAGAAACAACATAGCATAT ACAACATAAGACTCACGAAAACAAACAAAAACAAAAACAAAAGCACAGAGTATCGACCAT GCAGGACATAGGAAACAACAACAACAACAACCAATCAACTAACGAGAAATCAAGCCCAGC AGAACAGAAAACCGACTCACAAGTCATCCAAATCAATCATGGCGAACAACTCTCACCATC CAACTCGATCCAAATCTCACTCATCAAACCTCTAGGGATGGAACCGAGCATCGGACCAGC TGATTCGCAACAGCCCGATCAACTCATCCAGATACACTTCCGCAAGACCAAAGTTCAGGA TATCAAGACTCATATCTCTGCAACCTGGAGGGGCAAACCAAAGACCGATGGGATCAGACT GATTGCTCGTGGGAGGATCTTGAACGACCCTGAATCAGTCGGAGAGGCACTGGCTAAACC G
	Intron 1-2	291,698	291,793			96	gtatccatctcattcactggatctt..........gctcactcctttttgtgccatccag
2	EFP85475-2	291,794	292,479	0	2	686	CCTGAGGATTCCTTATCCACTCATCCAATCCATGTCGTCATTCGTCCCAATGCTTGGACT GAGAAACTGGAGCCCCCAAGACCCCTTTCGGCCCCTCCGGCTGCTACCAAACATCTCCCA GTTCCAATCAGTCCAATACCATCCAACCTCAGATCTGCCTCTCAGTCCTTTGCCAATCTA TCGAGCCCTACCAACGTTCAGGGTGATACTAATGAGGCCCCTAGCCTCCTCCTACCCTCT CGTTCAAACTTCTCAACGGCCAACAATGGATCTGGACTGTCCAATAGTAATAACCCCTCA TCACCTGGTGTATTATTCAACACTTACTTTTCCGGTCTCACGGCCTACGGTCGATTCAGC TTCATCCAGAATATCTTCCAAGCTCAGTTTAAGATCACCGAACGCTTGGATTTCCTTCGT CATCAACTCCATACTCAACACCTCAAACTACTCGGGATCAGTCATCCGTTAAAAAACTCA AATGCGAACTCCGATCCTAATTTATCAGATAGAAATGAGAGGGAGTGGAAGAGAGTCGAA GGCAAATTGATCAGTCTCTTGACCGAATTAAAGTTCCCACCCCCATACTCGGGCCATGCC GATTCGGCCAATTCTGAAAAACTGCTGACTGAATTCGATCCATTGTTACCCGACGAGTGT AGCGAATTTAAACGAGTAGAGATAGC
	Intron 2-3	292,480	292,559			80	gtaagctctttcgctttctctgatc..........cattctcctatctatttctcaacag
3	EFP85475-3	292,560	295,077	2	0	2,518	GGGCTTACCATATCTGCTCTACATTCCAGAAAGTGTGAGCCAGCTATCCACAAAAGATGG TTCGACCGGGACGAGCTCGGCCCTCAAGGAGTATAAAACACTCCAGAGAGACCTCAACCG CACCTTGCGTTTGGAGGCTCAGGTCCAGTATTTGATCTTACAGGCCCAGAAAACCCAAGC CAACTTGAACCAGATGGACGAGATCATTGCTGCCGGTCTCCGCCCTCAAGATGCCCTCGG CAATGACCGAGAGGTTCAGCAAGCCCAGCGAATCTTCGACGGCCTCTTCCCACCCAACGC TTTCCCATTCCCCCGTCCTCCTGGCGGGCCGGCCTTAGGACTCGGTCTCGGTTTAGGGCC TGCTGCTGATGGGCACCATCCACCAAACAATTTCATGCTTCCCAATGGACCCTTGTGGCA ACACCCCATGGCCCGAGTCCGCCGGTATGAGTTTACGATCAACCTCGATAGCATTCGACG CTACATGGCACCGCTCCTCTGGCTCTCATTGAAGCTCTCTGTGTTACTCTACATCTTCGG TCGCCAAGCCAGTTATGGCAAACTGGTCATCCTCATCATGATTGCGTTAGGCTGGGTGAT CTGGGAAGCCTATACTATCCACCAGAGACATGATGCACAAGCCAGACGACGAGACCGCTT ACAAAGAGGTCAGCAAGCACCAGGAGCAGCAGCGGGTGCAGCTGCCCCCGCCGCCGACCC AATTCAAGCGGTTTTGGACCGAGGCAGACGACGTGCTGAACGCGAACGACAGCAGCTCTT AAGAGAACAACGTCAACGAGTCGACGGTATCCTCGGCATTGATAATCAAGAGGGAGGAGC CGCAGCGCCGAACAACCCCCAGCCTGCCCCGATAGCCGCGCCCGCCCAACCTGCTCAACC CGCTGGCCCTCCCGCGGTGGTTGAAGCCCCTGCGGCCAACCCGCCTGCTGCTGCTGCTCC CCGTAGAAATGTCGGACGAGGTGGATTAAGAGCCGCCGCCGCTGATATTCGGGCCCGAGG GGGAGCGTTCCCTCCAGGGACCGAAGTGCGACCATTCCGAAGCACCTCGGCCTTCTCGCC AAAGTATTGGTTCAACTCGATTGCGGTGGTCGGCCTAGCCTCAGAATACCGGGAACTAGG CCTACATTCGATCGGCGAACGAGCGATGGGGGCTTCGAATCTGGAATACCCTCGATGGTA CCGATACCTTAGGAACTTGAAGACCGGGCTGGTATTGTTCATCGGTACCCTCTTGCCGGA GATCGAGAAGAAGAGACGCAAGGCACTCGAGAAGCGGGCTAGGATCCTGAACTTGGTGAT TGCTGATGCCGCCCGTGACACTAATAACCAGAACCGAAACCCACCACAACCGCAACAACC CCGGGTCCCGGGACCGGCAACAGAACCTAACAACAACGGACCCGCTACCACTCCTCCCCT AGCATCGGCGACCAATATCGCTCAGACTAGCGTCCCCCAGACGCCGAACACTCGAGCGGC GACGAGTGGAGACGGGCAAGACAATCAGCAGACGCCGCGGGCGGTTGAGGCAACTGCCCT GGAGCGCGTGGGCTCGGCGGGCTCGGAGCAGACGCTTTCCCATCGTCGGCCGCATTTGGC TGTTTCCCAGTCCGGCGAACTCGCACTTGGGTCGAACGGTTCTCAACGGGGAGAATCGGC GGAAACGATCGAGCGAGCTTCCAGCGGGCGCTCAAACATCCTTGGCAAAGCGTCCCAGAC TGAGCGCGTTGTTGGACCTACTTCACGACGGGCCGAGCCATCTGGCTCTTCTTCTTCCTC ATCATCCGTCCCTCCTGCTCCCCCTCTCCCTAGTACTTCCTCCTCCTCCTCTTCCTCATC TACTGCCCCTCAACAACAACTTCAACAACAGACTCGGGATGAGAATCTTCCCCTCGATAA CCCACCCCCTCCTTCCCCGCTCACTCCGTTGGATACCCCCCAAGTGGTCGGCGGACTCGA TGATACCGATGACGAGGAAATCATCGGGGCTGAGAACGAGGAGGCAGGGATGCTCCTCTT CTGATTACCCCTCACCCTTTCTCTCTCTCTCTCTCTCTCTCGTTTCTTAGCTTACCCTCG TCGTTGTATATCTTTCCAGCTTTCCTCTTTTTCCTTCCCCGCCCCCCCTCTTTTTTTATG CTTTTTGAACAATCTTTCTCGTGCTTTTGTTTCTTTGGCTGGTTGTTTCATCATATATAC TCTCACTTGTGTATGATAGATATTCAACTCAATCTAAAATTCAAACAAAAAAAAATCATC ATCATCATCAAATAAATAAATAAACTCAAAATGCTCTTGTTTTTTAATCAGTCCTAAAAT TACTATCTCTTTTCTCTTCCTCCTCTCCTCTCCTCCCCCAAGAAAAAAATGTGAAGAAAA GGAAGGGTTCCTGGCTACTGCTCAGCTTGTCTCACCATCATCATCACTTGGTCTGGTGTT ATCTTATCCCAATGTTCTTTGATCTTTTAATTCACGCTTTTCTTTTGATTGATTGATT
	3' downstream sequence						gattgaattgaaaatcaaaaaatcacagtgaatgtgggggctggatttgt..........

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