5' upstream sequence
{"provisional":{"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"}}},"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
..........attaaggttatagctaccacttgcaagcacatgatgcagaaagtaggcgg
1 CDS11714-1 1,999,529 1,999,757 0 0 229
{"provisional":{"seq":[{"style":[2]},-2,{"style":[2,-18,1,-29,0]}],"legend":{"_messages":[],"exons/Introns":{"flanking":{"label":"#008000","text":"Flanking sequence","class":"ef","default":null},"utr":{"default":null,"class":"eu","text":"UTR","label":"#cd6839"},"exon1":{"text":"Translated sequence","class":"e1","default":null,"label":"#1044ee"}}},"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
CAATGTGTCAAAGGATGAATGTACACTTTATTATCAAGTATCAAAAGGTATATTGAGCTC TATGGTTGAAGATTGGTATCATTAATGCAGCTTACAATGATAAGCACTTGTCGGGTACTA CCGAATACGGAATGATTTCAAGGCGTTATCCCACGGTCAACTTCCGGCTCTTTTGCACTT GTTTTACTCAAGAACGACC ATGGTACTCACTCAAGAACAACTGGAACAG
Intron 1-2 1,999,758 1,999,814 57
{"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only","provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","class":"eu","default":null},"exon1":{"label":"#1044ee","default":null,"class":"e1","text":"Translated sequence"},"intron":{"label":"#aaaaaa","text":"Intron sequence","class":"ei","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","class":"ef","default":null}}}}}
gtaaatggcttgactccaacaagtg..........ctgactcaagtctacaatgtcatag
2 CDS11714-2 1,999,815 1,999,828 0 2 14
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"expect":[],"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","default":null,"class":"eu","label":"#cd6839"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"intron":{"label":"#aaaaaa","text":"Intron sequence","class":"ei","default":null},"flanking":{"label":"#008000","default":null,"class":"ef","text":"Flanking sequence"}}},"seq":[{"style":[1,-13,0]}]},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
TTTGACCGAGACGG
Intron 2-3 1,999,829 1,999,890 62
{"provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"class":"eu","text":"UTR"},"exon1":{"label":"#1044ee","text":"Translated sequence","class":"e1","default":null},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"flanking":{"label":"#008000","text":"Flanking sequence","class":"ef","default":null}}}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
gtattgcattgcaggacacaccatt..........ctcattgaccgacacgactctgtag
3 CDS11714-3 1,999,891 2,000,156 2 1 266
{"provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","class":"eu","default":null},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"intron":{"text":"Intron sequence","class":"ei","default":null,"label":"#aaaaaa"},"flanking":{"default":null,"class":"ef","text":"Flanking sequence","label":"#008000"}}},"seq":[{"style":[1]},-3,{"style":[1,-25,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"flourishes":{}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
CTTCCTCATTATCCCCAACTTCTTCTCCAAAGACAAAGCCAAGGAACTCAAAGACCGTGC TGCTCAACTACTTGAAGAATTTAGCTTGGAAGGACATCCTTTGACGCGATTTTCAACTGG CACTGGTACTGACAAGAAGCATGTTGGTGACGACTACTTTTTGAACTCGGGAAACAAGAT CCATTTCTTCTTTGAAGAAGGTGCTTTTGATGATAATGGCCAATTGAAGATCCCCAAGGA GCGTGCTATCAACAAGATTGGACATG
Intron 3-4 2,000,157 2,000,213 57
{"provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"label":"#1044ee","class":"e1","default":null,"text":"Translated sequence"},"intron":{"text":"Intron sequence","class":"ei","default":null,"label":"#aaaaaa"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}}},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"expect":[]},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
gtaagaagtggaaaaaaaaaagagg..........agcatgtctaacagtgatggatcag
4 CDS11714-4 2,000,214 2,000,332 1 0 119
{"provisional":{"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},{"style":[1,-58,0]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"class":"eu","default":null,"text":"UTR","label":"#cd6839"},"exon1":{"label":"#1044ee","default":null,"class":"e1","text":"Translated sequence"},"intron":{"text":"Intron sequence","default":null,"class":"ei","label":"#aaaaaa"},"flanking":{"label":"#008000","default":null,"class":"ef","text":"Flanking sequence"}}}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
GTATCCACGAATTGGATCCCCACTTTAGGTCTCTTTCTCTCAATGAAACAATGTCCGAAA TGGTACGAGATCTAAAGTTCAAAGATCCGCGATTGCTGCAATCCATGGTCATTTTCAAG
Intron 4-5 2,000,333 2,000,387 55
{"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only","provisional":{"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","class":"eu","default":null,"text":"UTR"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"intron":{"text":"Intron sequence","default":null,"class":"ei","label":"#aaaaaa"},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"}}},"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtaagagtatagaatcactcaaatc..........tgattgatcaatgcaatccaaatag
5 CDS11714-5 2,000,388 2,000,409 0 1 22
{"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only","provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"text":"UTR","default":null,"class":"eu","label":"#cd6839"},"exon1":{"text":"Translated sequence","default":null,"class":"e1","label":"#1044ee"},"intron":{"text":"Intron sequence","class":"ei","default":null,"label":"#aaaaaa"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}}},"seq":[{"style":[1,-21,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"expect":[]}}
CAACCTTACATTGGTGGACCAG
Intron 5-6 2,000,410 2,000,464 55
{"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only","provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","default":null,"class":"eu"},"exon1":{"text":"Translated sequence","default":null,"class":"e1","label":"#1044ee"},"intron":{"label":"#aaaaaa","text":"Intron sequence","class":"ei","default":null},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}}},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"expect":[]}}
gcacgtattgatccagtgtatacga..........ctgataataacatctttggttatag
6 CDS11714-6 2,000,465 2,000,590 1 1 126
{"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only","provisional":{"seq":[{"style":[1]},-1,{"style":[1,-5,0]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"default":null,"class":"eu","text":"UTR","label":"#cd6839"},"exon1":{"default":null,"class":"e1","text":"Translated sequence","label":"#1044ee"},"intron":{"default":null,"class":"ei","text":"Intron sequence","label":"#aaaaaa"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}}},"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]}}}
TGCCATCTCATCAAGATTCATCCTTCCTTTACACGGATCCTTTATCAGCCACTGGTTTCT GGTTTGCATTGGAAGATTGCACAGAGGAGAATGGGTGTTTGTGGTTTATTCCTGGATCAC ATAAGG
Intron 6-7 2,000,591 2,000,652 62
{"provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","class":"eu","default":null,"text":"UTR"},"exon1":{"label":"#1044ee","default":null,"class":"e1","text":"Translated sequence"},"intron":{"default":null,"class":"ei","text":"Intron sequence","label":"#aaaaaa"},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"}}},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
gtaagacaagacgattatggatgca..........aaaggtgtattcacacaattggtag
7 CDS11714-7 2,000,653 2,000,893 1 2 241
{"provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},-3,{"style":[1,0]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"class":"eu","text":"UTR"},"exon1":{"text":"Translated sequence","class":"e1","default":null,"label":"#1044ee"},"intron":{"label":"#aaaaaa","class":"ei","default":null,"text":"Intron sequence"},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"}}}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
AGAAACCTATTGAAAGACGATTTGTGCGTGATCCCAATGGCAGTGGCACCACGTTTATTG GTGAAGAGACAGTCCATGTGGATGAATCAAGATATGTCAAAGGAGAAGTGGAAGCTGGTA CCTTGGTGTTGATCCATGGTAGTGTTGTTCACAAGTCAGCACCAAACTATTCCAAAAAGT CACGCTACATTTATACTTTCCACGTCATTGAAGGTGAAGCTGAATATCCAAAGGATAACT G
Intron 7-8 2,000,894 2,000,959 66
{"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only","provisional":{"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"class":"eu","text":"UTR"},"exon1":{"label":"#1044ee","default":null,"class":"e1","text":"Translated sequence"},"intron":{"label":"#aaaaaa","class":"ei","default":null,"text":"Intron sequence"},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"}}},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{}}}
gtaagccaatgcttaaaggaagatc..........ttattcactatgatatgtatactag
8 CDS11714-8 2,000,960 2,001,060 2 1 101
{"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"expect":[],"flourishes":{},"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","text":"UTR","class":"eu","default":null},"exon1":{"default":null,"class":"e1","text":"Translated sequence","label":"#1044ee"},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"flanking":{"text":"Flanking sequence","class":"ef","default":null,"label":"#008000"}}},"seq":[{"style":[1,-39,2]},{"style":[2,-40,0]}]}}
GCTTCAACCTAGCGATGATGCACCTTTTACCAAGCTATAGCTGTATTATGTTGTTCATGA ATCAATACCAAATCATTACTTGTATAACATATGTTGAATCG
3' downstream sequence
{"provisional":{"expect":[],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"seq":[{"style":[1]}],"legend":{"_messages":[],"exons/Introns":{"utr":{"label":"#cd6839","default":null,"class":"eu","text":"UTR"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"flanking":{"label":"#008000","class":"ef","default":null,"text":"Flanking sequence"}}}},"url":"/Lichtheimia_ramosa_gca_000945115/Component/Transcript/Exons/exons?g=LRAMOSA03977;r=LK023346.10X0P+01999529-2001060;t=CDS11714;db=core;time=1743888005781.781;adorn=only"}
gaagaatgtcctaatgatgcggggtgcatcgtctttgcatttgggttttt..........
Lichtheimia ramosa str. JMRC:FSU:6197 (Lramosa_hybrid_454_Illumina) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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