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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
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Transcript: AAW42789

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Description

histone deacetylation-related protein, putative

Location

Chromosome 4: 1,669,780-1,672,542 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 25 domains and features.

Gene

This transcript is a product of gene CND06060 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	AAW42789	2635	383aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5KHL4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

loadingloaded

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........tctgcaccatcccgcgatgctcccccccgcgccccccccgctccccgccc
1	AAW42789-1	1,672,542	1,670,704	0	2	1,839	CCCCCGACTCCCCCGTGCAGCTGAGCAGCGTCGAGATCAACATCCTCATCTACCTCTACC TCCAGGAGAGCAACTTTCCCCACACCGCCTTCACCCTCCTCGCAGAGTCCAACCTCCCCG CCACCCCCCTCTTCCAGCACTTCAACCCCGCCTACCCCGCCCCCGCCAAGCCCGCTCGAC CCGCCCACAGCGCACCCGCGTTCGGCGCCGCCGCAGGCCGCATACAGCGCGGCGAGCTCG TCCGCAAGCTGTGGAAGGCCGTCCGCTGGGAGCACGTCGAGCGGCACGTCGGCGAGAACG GTGTATGTCCTCCCGCTTCTGCGTATAGCCCGCTGACATTCCGCAGGAACCGCTCTCGCC CGAGTGTCCCAACCCGTTCCACCTCCTCATCCCGCACGTGTGCCCCCCGTCCTGCCCCTC CGCCAGCGCCAACCCGCCCCTCCCGCTCCCCTCCGTCCTCCAGGCCGCCAGCGCCCAGGC CGCGAATGCAGTCGCCCCGCCGCCCAAGCGGCCAGAGCCGTTCCCCCCGCCAGAGGAGAG GGTGAAGGACAAGTCGAGGGGAAAGAGAAAGACCAGACGGCCGAGTTCGTCCCCCGCGCC CGCCCAGCCAGAAGCTCGAAAGGAAAACGAAAAGACACGTAAACGAGCCCGGGTGAGCGA TGCAGAGGACGACAAGGCGTCTAAAAAACTGGAGCCGGAGCGCGAGCCGGAGCGTGAGGC ACTGCAAGTGCCAAGCACCCAACCGTCCCGCGCAACATCACCCGACAAGTCCCGTCGACC TAGTCCCCGCTCCAAAGTCAACACCAGTGCCAGCACCAGTGCCAAGACCGATGAAATCGG GGTATGGACAGAACACCGAGACGTCGTTTCCAACGTCGCCTGGAATCCCAAAAACGTAGA CCTCTTGGCCACAGGCTCGGCAGACGGCTTCGTCAGGCTTTGGGACTTTTTGCCCCTCTC CGCCTCCTCCTCCGCCACCGCCCCGCTCACCCTCCCCTCCCGCCCCACCGGCATCTCCCA CAAGGGCATCGAGTCCTCCAAAAAGACCATCACCTCTGTCGCCTGGCACCCCGACGGCAC CATCCTCGCCACCGGCTCCCAAGACGGCGTCGGCCGTCTCTTCACCCCGTCCGGCCAGCT GCAGGCCATCATGAGTTATGGAAGAGGCGCCGTCAATGCGATGAAGTGGAGTCCCTCCGG CACCCAGATCCTGGTAGGCAAAGATGATTTCACGGTGTGCAAGTGGATGGACAGGGGCGG GAGTATGGCCATGAAGATGTGTTACGATGCGCATACCAAGGAAGTAAACGACGTCGATTG GCTAGACGACGAAGTCTTTGCGTCCGCCGGCAACGACCATACCATCCACGTCCATCACGG GGACGATAAACGGCCCCGGTTTACTTTTCGCGGACATACGGATGATGTCACACGGATCAA ATGGTCGCCCCTTGGCGCGGCAGAGCGGCTGCTGGCCAGTGTTTCGGACGATGGGAATTG TATGATTTGGAAACTACCTTTTTACCCTTCTGCAAGAGGTAAGAGCGCGAGTGTGGGTCT GGGCGGGACAAGATCGCTCTCGCCAATGAAAAAGATGGAACCTCCAAGCGATGAAGACGA TTACTTTCACCAACAACCTCAACCTCAATCCCACCCCAACCCCAACCCCAACTCGGCAGA CTCGGGCCCAAATGCCCGATCCAACTCCACCTCGGCGATATCCATTGAAAACTGTCTGCA CAGACTCAACGTCGTAAGCGGGAGCGAGAATAAACGGATGAGCATGCTCGAGTGGATGCC GGTTGACGATGGAGCGCGGGCGCGGATGATACTCGCTGC
	Intron 1-2	1,670,703	1,670,636			68	gtgagtcgcgtcgcgtcttctttcg..........ctaaccatgtgtgcgaaaaaaacag
2	AAW42789-2	1,670,635	1,670,287	2	0	349	CGGCGGCCAAGACTCCACGATCAAACTGTTCGACGCCCTATCCGGCGAAACACTCCACGT CCTCCCCGGTCTGGAATCCGGTACAGGCTCTTTGGCATTCTCCCCCTTTTCCTTGAACAG CTTGGTTGGTTCTCTTTTCCCCACCACCACCACCACCACCACCGCCGCCGAAAACGGAAC AGCCGCGGCCACGGCAGAACGCCTAGGGGTCGGCAAATACGGTCTCCTAGCCGGCGGAGG ATGGGATGGCGTACTCCGCATATGGGATGTGGAGACCGGCCGCGTCTTATGGGGCACAGA GGTGGAAGAGGAGGAAGGGAAGCGGATGGTCAGGGAACGGCCCATGATG
	Intron 2-3	1,670,286	1,670,227			60	gtgtgtcgtgtttcgtctcgtgatt..........taagataatacgctgacgggaacag
3	AAW42789-3	1,670,226	1,669,780	0	0	447	CTCTCGATGGCTTGGCGAGAAGACGGGAAACACCTCGCGTGCGGGCTGTTCAACAAGACG CTGATGGTGGTGAATGTCATCAAGGCTCTAGAGGCTGGAAAGGAGAAGAATTAGAGAGTA AAGGGTAGGGCGAGAAGCGTCAATCGCTTCTAGTCGTGGCTAGAGTTAACAAGGTTTTTT TATCTCCCGTTTGGTCAACCTCTTTAATCGTTTTTAATTTTTTTACTTTTCATCTTTTAG GATCATTGCGTGGATGGTCTTTTTTACCGGGGGTTAGAGTAAACGTGAGGGATGAATAGG TATATCCGCACAAACCGCGCCCTGCAGCCATTGTTCGTGGAAAAAGGGTTAAAGAGTCTG TTGTCAGCCAGCCCGGGAAAAATGTGAATGCCCGGAAAGTCGGACAAGGAGGAGATTGTG AATGGGAGTTGTCTTGAGACTCGTGAC
	3' downstream sequence						tgttgtttcgaacatggattggatcattcctttggctatgactacaagaa..........

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