5' upstream sequence
{"provisional":{"seq":[{"style":[1]}],"flourishes":{},"legend":{"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null}},"_messages":[]},"expect":[],"ref":{"style":[[0,""],[0,"color:#008000"]]}},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
..........ttgtcagttgccggatcaacatctgattgtcaacaacagcagccaacagc
1 AAW40830-1 855,950 856,710 0 0 761
{"provisional":{"flourishes":{},"seq":[{"style":[2]},{"style":[2,-19,1]},{"style":[1]},-9,{"style":[1,-40,0]}],"legend":{"exons/Introns":{"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"},"utr":{"class":"eu","label":"#cd6839","text":"UTR","default":null},"flanking":{"text":"Flanking sequence","class":"ef","label":"#008000","default":null}},"_messages":[]},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]}},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
GAACACCTCGCTTTCGCCGGAACAAAACGGTTATTCTTCTTCATTGTATCCAGCTAGCCA TAAATCTTTCGGTTTCCGCTATGGCGCCAAAACAGCGTCGTGCAACCAACTCCAAAGCCA AAGCGACACCGACATCTGTCACCTCTCCGCCCGATCAATCATCACCAGTACGCTCAAGAG GCGGGTCATCATCCCTCTCCCCGATCAGGTCACCGCAAGAAAACTCCGACTTGGAGGACA ACAACGAGCGGCATCCAGGGACCAACGGATCTGGATTGAAGGCCGAAGACGAAGGGTCGA CAGATTTACTTGATAGAGATGGCGATTTGGAAGAAGTTCATGCCTGCCCGGACAGTATTA CATTTCGTTATCCTTCGTCGGTTCCCGATTTTACCATCCTCAGTCCACGTGAAAAAGCTT TCAAAGTAGCGAGGTTCTTACATTGTACAGCCCCTAGTTGTGCCTGCACTGGCCTTGAAC CTCCTGCCGGCAGAACGATCCGAATAACCAAACATGATTCCAGCAATGAGGACGAAGACG ATGAGGACGAGGATGACGATGTATCTATGGAGGACTCTGAAAATCCATTGGATTTTGAAG ATAAGAAAGATGAATGGAGGACGAAAGAAGGGTGGTGGAGAATATGCGGAAAGTGTGGAC ACGGTTGGGAGAGTGGGGGGCATGTCTGGGCTGATGATGTCCCTCCGAAAGAAAGGACAA GAAGAGGCAAGGTTGTTGGGAGGATAGAGGAAATACTCGAA
Intron 1-2 856,711 856,758 48
{"provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"legend":{"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null},"intron":{"default":null,"text":"Intron sequence","class":"ei","label":"#aaaaaa"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null}},"_messages":[]},"flourishes":{},"seq":[{"style":[1,-47,0]}]},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
gtaggactgcaccgttatcatccgagaagttgactgatcagcctctag
2 AAW40830-2 856,759 857,382 0 0 624
{"provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"flanking":{"default":null,"text":"Flanking sequence","class":"ef","label":"#008000"},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"utr":{"default":null,"text":"UTR","label":"#cd6839","class":"eu"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]},-9,{"style":[1,-23,0]}]},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
GATGAAAACAAGCTCGTTGAATTCCCCACTCCTCAACCCGAATCCATTTCTTCCCTGTTG AAACAATTGCACGAATTTGTACCCCCGCCTGCCGGGAAAACGACCATTTCTGCTCTTCCT CCTCCTGTTGATCTTTCTACCCCTGATGATGATACGCAAGAAGATAATAGTGACGGCGAA CGACCGCGAAAGCGCCGACGGCAAGCAAGCGAATCTACTCACTCTGATATCGAAGGAGAA CAGCACCGAGGTCAGGGGAAAAAGAAACAAGGAAAGGGCCCTGCGAAAGGCGCTAAACCG AGGGTACCCCGTACTGTCGTCCGAGGGGCGCATGGTTTTATTCCTATGGCGACGGACCCC GACGGCAATCAGCATGTTGAAGGACACCTCCCCATTAGTGCCGGAGGTACAGGGGCTGAT GAAACCTTTGAAGAGGAGGAGGAGGAAGAGGAGGAGCTGTCAACAGCTAAACGGCCAGAG CTGGATGAGACCGAGAGAAGAAGGAGAACAGAGATTAAAGTCAAGGAAAAAGAAAGGGAA GAAGAGCTAGTCAGCAGGTTGGCTGCTGGTGTCAATCCGGAGGATGCAGGAGGGGCAGTC GAAATTTGGGAAGGGATTGAGCTG
Intron 2-3 857,383 857,434 52
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"flourishes":{},"legend":{"exons/Introns":{"flanking":{"default":null,"text":"Flanking sequence","label":"#008000","class":"ef"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"utr":{"default":null,"text":"UTR","class":"eu","label":"#cd6839"}},"_messages":[]}}}
gtaaacgaaccacataccgctccga..........aggattaatactgatgaataaacag
3 AAW40830-3 857,435 857,746 0 0 312
{"provisional":{"seq":[{"style":[1]},-4,{"style":[1,-11,0]}],"flourishes":{},"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"default":null,"text":"Intron sequence","class":"ei","label":"#aaaaaa"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"utr":{"label":"#cd6839","class":"eu","text":"UTR","default":null}},"_messages":[]},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]}},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
CAAAAGCTTCCTCTTCGGCCGGCCGCGATTGAACAAGCAAATCGAGAAATCATGCTACCC GTCGTGTCCTCCCGCAACCCAACCCCGGTCGCCACCATTCTACTGGTTGGCCTCAAGAAT GTCTTCCAACGTCAACTTCCAAAGATGCCTAGAGAATACATTACCCGCCTAGTATTGGAC AAAAATCATATCAGTATGGCGATCGTTAAACGAGGGTACCGGGTAGTAGGTGGAATCTGC TACAGGCCCTTTGAGGCTCGAGGGTTTGCGGAGATTGTTTTTTGTGCCGTAGACAGTTCC GAACAAATCAAG
Intron 3-4 857,747 857,797 51
{"provisional":{"legend":{"exons/Introns":{"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[]},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
gtcagtcagtgttcagccactttca..........cattgtcgggctgatgtcttaatag
4 AAW40830-4 857,798 858,058 0 0 261
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"flourishes":{},"seq":[{"style":[1]},-3,{"style":[1,-20,0]}],"legend":{"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"exon1":{"label":"#1044ee","class":"e1","text":"Translated sequence","default":null},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null}},"_messages":[]}}}
GGTTACGGGTCACATCTGATGAATTCGCTCAAAGACCACGTCCGAAAAGCACACCCAACT ATCAATGTCTTCCTGACTTATGCAGATAATTATGCTGTGGGATATTTTAAGAAGCAGGGT TTCACCAAAGAAATTAGCTATCCGCGTGAGCGCTGGGTCGGTTACATCAAAGATTACGAA GGTGGGACCATCATGCAGGGGCGAATGCTGCCAAAAGTCAAGTATATGGAGGTCCATCAA ATGTTAGCGGACCAAAAGGCT
Intron 4-5 858,059 858,109 51
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"utr":{"class":"eu","label":"#cd6839","text":"UTR","default":null}},"_messages":[]}}}
gtgagctacgcatcctatgacaaat..........ctccttgttaatctaattcctgtag
5 AAW40830-5 858,110 858,233 0 1 124
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"flanking":{"label":"#008000","class":"ef","text":"Flanking sequence","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"exon1":{"label":"#1044ee","class":"e1","text":"Translated sequence","default":null},"utr":{"label":"#cd6839","class":"eu","text":"UTR","default":null}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]},-1,{"style":[1,-3,0]}]}}
GCCATAATCGCTAAGATCAAAACCTTGACCAAATCCCATATCATTCACCCGGGTTTACAA ATTTTCAAGGAACGTCAACCTGATGAAGAAATCAAACTCACGAAGGAGCAAGTTCCTGGA TTAG
Intron 5-6 858,234 858,290 57
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"flourishes":{},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"flanking":{"default":null,"text":"Flanking sequence","label":"#008000","class":"ef"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"},"exon1":{"default":null,"text":"Translated sequence","class":"e1","label":"#1044ee"},"utr":{"text":"UTR","class":"eu","label":"#cd6839","default":null}},"_messages":[]},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtaagttatatttgtatatatcatt..........caccaacgggctgacaccgccatag
6 AAW40830-6 858,291 858,324 1 2 34
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"legend":{"exons/Introns":{"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null}},"_messages":[]},"seq":[{"style":[1,-33,0]}],"flourishes":{}}}
CTGAAAGTGGATGGAATCCCGATCTTGATGATAT
Intron 6-7 858,325 858,389 65
{"provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"exon1":{"default":null,"text":"Translated sequence","class":"e1","label":"#1044ee"},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"}},"_messages":[]}},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
gttcgcgcgccttccgttctacgcc..........ctaataaagagtggatcggtattag
7 AAW40830-7 858,390 858,538 2 1 149
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},-1,{"style":[1,-28,0]}],"flourishes":{},"legend":{"exons/Introns":{"flanking":{"default":null,"label":"#008000","class":"ef","text":"Flanking sequence"},"intron":{"default":null,"label":"#aaaaaa","class":"ei","text":"Intron sequence"},"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"}},"_messages":[]}}}
CGTTCGCCAACCAAAGCGAAATCCATACCATGTTCTCCTTCAACATGTTCTGAATGATCT GCAGAATGAGCCTTCTGCATGGCCTTTTGTGAAGCCTGTGGACTCAAGTGTAGTGGCGGA CTACTATGATGTAATCAAGGACCCTATGG
Intron 7-8 858,539 858,598 60
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"legend":{"exons/Introns":{"flanking":{"default":null,"text":"Flanking sequence","class":"ef","label":"#008000"},"intron":{"class":"ei","label":"#aaaaaa","text":"Intron sequence","default":null},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"utr":{"default":null,"label":"#cd6839","class":"eu","text":"UTR"}},"_messages":[]},"seq":[{"style":[1]}],"flourishes":{}}}
gtgcgtgtaatattttttgtttccc..........gaaacgcctgaccccattcatgcag
8 AAW40830-8 858,599 859,042 1 1 444
{"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"flourishes":{},"seq":[{"style":[1]},-2,{"style":[1,-16,2]},{"style":[2]},-2,{"style":[2,-23,0]}],"legend":{"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"exon1":{"text":"Translated sequence","class":"e1","label":"#1044ee","default":null},"utr":{"default":null,"text":"UTR","class":"eu","label":"#cd6839"}},"_messages":[]}}}
ACCTGTCCACCATGGAATACAAATTAGAGAACAACCATTACGAGTCTATTGAAGGCTTCG TTGCCGACGTGAAGCTCATGTGTGCAAATTGCCGACAGTATAATGGCGAAAAGAGCACCT ACACCAAACAAGCAAACTTGTTGGAAAAAGCTCTAGATAGAATCTTGAAAAAACGGAAAT CAGTTCTGGCTGACTGAGGGGAGTGAAAAGAGGGGTAAAGCGCATTATAAAGTGTACGCT AGTACATTGTGACATACATTTCAAGCTGTATTTTACAGGATATGAGCGTTTGATTTGATA GTAATTAGGGTGTTCAACTGCTGATCATCCAACCACAAAAACGTTGTTGTAATGCATTGA GATGGATTCATCGATAGATAGACCGTTTCATGTGTAACTGATGATGAGAACTCTTCTATC CATTATTTGCTGATGTAATGTTCT
3' downstream sequence
{"provisional":{"legend":{"exons/Introns":{"flanking":{"class":"ef","label":"#008000","text":"Flanking sequence","default":null},"intron":{"text":"Intron sequence","class":"ei","label":"#aaaaaa","default":null},"exon1":{"default":null,"text":"Translated sequence","class":"e1","label":"#1044ee"},"utr":{"class":"eu","label":"#cd6839","text":"UTR","default":null}},"_messages":[]},"seq":[{"style":[1]}],"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"expect":[]},"url":"/Cryptococcus_neoformans/Component/Transcript/Exons/exons?g=CNA03280;r=10X0P+0855950-859042;t=AAW40830;db=core;time=1743493426830.83;adorn=only"}
gatatacccgcaactaccggctggtttatttatgtttcgacattttgcca..........
Cryptococcus neoformans var. neoformans JEC21 (ASM9104v1) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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