Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----
Tuber melanosporum Mel28
--------------------------------
-
Tuber magnatum
-------
Tuber borchii
-------
Arthrobotrys oligospora ATCC 24927
--------------------------------
-
Drechslerella stenobrocha 248
-------
Dactylellina haptotyla CBS 200.50
-------
Talaromyces atroroseus
-------
Talaromyces stipitatus ATCC 10500
-------
-
Talaromyces marneffei ATCC 18224
-------
----
Talaromyces islandicus
-------------
Talaromyces cellulolyticus
--------------
Rasamsonia emersonii CBS 393.64
----------
Penicillium antarcticum
----------
-
Penicillium camemberti FM 013
-------------
Penicillium brasilianum Pbras_Allpaths-LG
-------------
Aspergillus clavatus NRRL 1
-------------
Aspergillus fischeri NRRL 181
-------
-------
Aspergillus terreus NIH2624
----------
-
-
Aspergillus flavus NRRL3357
----------------
Aspergillus oryzae RIB40
----------------
Aspergillus fumigatus
----------------
Aspergillus nidulans FGSC A4 ASM1142v1
----------------
Aspergillus niger ASM285v2
-----------------
Penicilliopsis zonata CBS 506.65
------------------
Byssochlamys spectabilis No. 5
------------------
Elaphomyces granulatus
----------
-
Paracoccidioides lutzii Pb01
----------
----
Paracoccidioides brasiliensis Pb18
-------
-------
-
Coccidioides posadasii str. Silveira
----------------
Coccidioides immitis H538.4
----------------
Trichophyton verrucosum HKI 0517
----------------
Trichophyton mentagrophytes
----------------
Trichophyton violaceum
----------------
Trichophyton tonsurans CBS 112818
----------------
-
Trichophyton interdigitale MR816
-------------------
Trichophyton rubrum CBS 118892
-------------------
Trichophyton benhamiae CBS 112371
-------------
----
Trichophyton soudanense CBS 452.61
-------------------
Trichophyton equinum CBS 127.97
----------
--------
Nannizzia gypsea CBS 118893
-----------------
Microsporum canis CBS 113480
-------------
Blastomyces silveriae
-------------
-
Emmonsia crescens UAMH 3008
----------------
Emmonsia sp. CAC-2015a
----------------
Blastomyces percursus
-------------
-
Blastomyces gilchristii SLH14081
----------
----
Blastomyces dermatitidis ER-3
-----------------
Polytolypa hystricis UAMH7299
-----------------
Emergomyces pasteurianus Ep9510
-----------------
Helicocarpus griseus UAMH5409
---------------
-----------
Histoplasma capsulatum NAm1
---------------------
Uncinocarpus reesii 1704
---------------------
Ascosphaera apis ARSEF 7405
-------------
-
Capronia coronata CBS 617.96
----------------
Capronia epimyces CBS 606.96
-------------
-
Phialophora americana
----------------
Phialophora attae
----------------
Cladophialophora yegresii CBS 114405
----------------
Cladophialophora psammophila CBS 110553
-------------
-
Cladophialophora immunda
----------------
Cladophialophora carrionii
----------------
Cladophialophora bantiana CBS 173.52
----------------
Fonsecaea pedrosoi CBS 271.37
-------------
----
Fonsecaea multimorphosa CBS 102226
----------------
-
Fonsecaea monophora
-------------------
Fonsecaea erecta
-------------------
Fonsecaea nubica
-------------------
Exophiala mesophila
-------------------
Exophiala sideris
-------------
-------
Exophiala oligosperma
-------------------
-
Exophiala dermatitidis NIH/UT8656
----
-------------------
Exophiala spinifera
-------------------------
Exophiala aquamarina CBS 119918
-------------
----------
Exophiala xenobiotica
-----------------------
Rhinocladiella mackenziei CBS 650.93
------------------------
Cyphellophora europaea CBS 101466
-------------------------
Phaeomoniella chlamydospora
-------------------------
Endocarpon pusillum Z07020
-------------
-
Ceratocystis platani
---------------------
----
Thielaviopsis punctulata
----------------
-
Lomentospora prolificans
----------------
Scedosporium apiospermum
----------------
-
Verticillium dahliae VdLs.17
---------------------
----
Verticillium longisporum vl2.denovo.v1
-------------------
Colletotrichum graminicola M1.001
----------------
-
Colletotrichum higginsianum
----------------
Colletotrichum fructicola Nara gc5
----------------
Colletotrichum orbiculare MAFF 240422
------------------------
-
Stachybotrys chlorohalonata IBT 40285
-------------------
Stachybotrys chartarum IBT 40288
-------------------
-
Fusarium verticillioides 7600
----------------------
Fusarium fujikuroi EF1
----------------------
Fusarium graminearum CS3005v1
-------------
-------
-
-
Fusarium pseudograminearum CS3096
----------------------------
Fusarium culmorum CS7071
-------------------
--------
[Nectria] haematococca mpVI 77-13-4
-----------------------------
Fusarium oxysporum f. sp. lycopersici 4287 FO2
------------------------------
Neonectria ditissima
---------------------------
-
Acremonium chrysogenum ATCC 11550
----------------------
Ustilaginoidea virens Assembly_for_version_1_of_the_Villosiclava_virens_genome
----------------------
Trichoderma longibrachiatum ATCC 18648
----------------------
Trichoderma parareesei
----------------------
Trichoderma gamsii
----------------------
Trichoderma atroviride IMI 206040
----------------------
-
Trichoderma citrinoviride
-------------------------
Trichoderma virens Gv29-8
-------------------------
Trichoderma harzianum ASM98886v1
-----------------------
----
Trichoderma guizhouense
----------------
-------
Trichoderma asperellum CBS 433.97
----------------------
Trichoderma reesei QM6a
-----------------------
Escovopsis weberi
-------------------
Cordyceps sp. RAO-2017
-------------------
Cordyceps militaris CM01
-------------------
-
Cordyceps fumosorosea ARSEF 2679
--------------------
----
Beauveria brongniartii RCEF 3172
----------------------
Cordyceps confragosa RCEF 1005
-----------------------
Beauveria bassiana ASM168263v1
-------------------
Metarhizium robertsii ARSEF 23
-------------------
Metarhizium majus ARSEF 297
-------------------
-
Metarhizium rileyi RCEF 4871
----------------------
Metarhizium album ARSEF 1941
----------------------
Metarhizium acridum CQMa 102
-------------
--------
-----
Torrubiella hemipterigena
--------------------------
Claviceps purpurea 20.1
--------------------------
Moelleriella libera RCEF 2490
--------------------------
Pochonia chlamydosporia 170
----------------------
-
Ophiocordyceps camponoti-rufipedis
-------------------------
Ophiocordyceps australis OphauG2
-------------------------
Tolypocladium capitatum
-----------------------
-
-
Tolypocladium paradoxum
----------------------
Tolypocladium ophioglossoides CBS 100239
-----------------------
Drechmeria coniospora
-----------------------
Hirsutella minnesotensis 3608
-----------------------
Purpureocillium lilacinum ASM165320v1
-------------------
-
Hypoxylon sp. CI-4A
----------------------
Daldinia sp. EC12
-----------------------
Pestalotiopsis fici W106-1
----------------------------
-----
Microdochium bolleyi
-----------------------
Pseudomassariella vexata
-----------------------
Eutypa lata UCREL1
-----------------------
Rosellinia necatrix
-------
----------
Gaeumannomyces tritici R3-111a-1
------------------------
-
Pyricularia oryzae 70-15
-------------------
Magnaporthiopsis poae ATCC 64411
-------------------
Sporothrix insectorum RCEF 264
-------------------
-
Sporothrix brasiliensis 5110
-------
-----------
----
Sporothrix schenckii ATCC 58251
-----------------------
Ophiostoma piceae UAMH 11346
-----------------------
Grosmannia clavigera kw1407
-------------------
-
Diaporthe helianthi
--------------------
----
Diaporthe ampelina
-----------------------
Valsa mali var. pyri
-----------------
--------
Coniella lustricola
----------------
-
Neurospora crassa OR74A
----------------
----
Neurospora tetrasperma FGSC 2509
-----------------------
Sordaria macrospora k-hell
-------------------
-
Chaetomium thermophilum var. thermophilum DSM 1495
-------------
-
----
Chaetomium globosum CBS 148.51
-----------------------
Thermothelomyces thermophilus ATCC 42464
-----------------------
Thielavia terrestris NRRL 8126
------------------------
Madurella mycetomatis
-------------------------
Coniochaeta ligniaria NRRL 30616
-------------------------
Phaeoacremonium minimum UCRPA7
---------------------
-
Oidiodendron maius Zn
----------------
Amorphotheca resinae ATCC 22711
----------------
-
Erysiphe necator
-----------------
----
Erysiphe pulchra
--------------------
Blumeria graminis f. sp. hordei DH14
----
-------------
-
Sclerotinia borealis F-4128
-------------------
----
Sclerotinia sclerotiorum 1980 UF-70 ASM14694v1
---------------------
-----------
Botrytis cinerea B05.10
-------------------
-
Hyaloscypha variabilis F
----------------
----
Meliniomyces bicolor E
-----------------------
Glarea lozoyensis ATCC 20868
--------------------
-
Diplocarpon rosae
-------------------
Marssonina brunnea f. sp. 'multigermtubi' MB_m1
-------------------
-
Phialocephala scopiformis
-------------
-------
Phialocephala subalpina
-------------
----
Rhynchosporium agropyri
----------------
-
Rhynchosporium secalis
-------------------
Rhynchosporium commune
--------------------
Cadophora sp. DSE1049
----------------
Rutstroemia sp. NJR-2017a WRK4
-----------------
-
Rutstroemia sp. NJR-2017a BBW
----------------
Rutstroemia sp. NJR-2017a BVV2
---------------------
Pezoloma ericae
-----------------
-
Rachicladosporium sp. CCFEE 5018
----------------
Rachicladosporium antarcticum
-----------------
-
Baudoinia panamericana UAMH 10762
----------------
Hortaea werneckii EXF-2000
-------------
----
-
Pseudocercospora musae
----------------------
Pseudocercospora fijiensis CIRAD86
-------------------
-
Zymoseptoria brevis
----------------------
Zymoseptoria tritici IPO323
----------------------
Cercospora berteroae
----------------
-
-
Cercospora zeina
-------------------
Cercospora beticola
-------------
--------
Ramularia collo-cygni
-----------------------
Sphaerulina musiva SO2202
-----------------------
Dothistroma septosporum NZE10
-----------------------
Pseudocercospora eumusae
-------------------
Aureobasidium namibiae CBS 147.97
------------------------
-
Aureobasidium melanogenum CBS 110374
-------------------
Aureobasidium pullulans EXF-150
-------------------
Aureobasidium subglaciale EXF-2481
----------------------------
Elsinoe australis
----------------
-
Diplodia seriata UCDDS831v0.1
----------------
----
Diplodia corticola
-----------------------
Neofusicoccum parvum UCRNP2
------------------
-----
--------
Macrophomina phaseolina MS6
------------------------
Coniosporium apollinis CBS 100218
------------------------
Acidomyces richmondensis BFW
----------------
Periconia macrospinosa
------------------------
-
Stagonospora sp. SRC1lsM3a
-------------------
Paraphaeosphaeria sporulosa
-----------------------
-
Epicoccum nigrum
----------------------
Ascochyta rabiei
----------------------
-
Pyrenophora tritici-repentis Pt-1C-BFP
-------------------------
Pyrenophora teres f. teres 0-1
-------------------------
Bipolaris zeicola 26-R-13
-------------------------
Bipolaris victoriae FI3
-------------------
-
-
Bipolaris maydis C5
-------------
-
-------
Bipolaris oryzae ATCC 44560
----------------------
Bipolaris sorokiniana ND90Pr
-----------------------
Stemphylium lycopersici
-----------------------
Exserohilum turcica Et28A
-----------------------
Alternaria alternata
------------------------
Leptosphaeria maculans JN3
------------------------
Parastagonospora nodorum SN15
------------------------
Pyrenochaeta sp. DS3sAY3a
-------------------------
Corynespora cassiicola Philippines
-------------------------
Clohesyomyces aquaticus
--------------------------------------
Xylona heveae TC161
------------------
-
Sugiyamaella lignohabitans
-------------
Wickerhamiella sorbophila
-------------
-
[Candida] auris ASM118947v1
----
-----------
----
Clavispora lusitaniae ATCC 42720
--------------------
Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993
---------------------
-
Nadsonia fulvescens var. elongata DSM 6958
----------------
Kuraishia capsulata CBS 1993
----------------
-
Komagataella phaffii GS115 ASM174695v1
-------------------
Komagataella phaffii GS115 GCA_000027005.1
-----------------
-
-
Wickerhamomyces ciferrii
-------------------
Wickerhamomyces anomalus NRRL Y-366-8
----------------
-
Cyberlindnera fabianii ASM320585v1
----------------
Cyberlindnera jadinii
----------------
-
Pichia membranifaciens NRRL Y-2026
-------------------
Pichia kudriavzevii ASM76445v1
-----------------
-
-
Ogataea parapolymorpha DL-1
-------------------
Ogataea polymorpha
--------------------
Brettanomyces bruxellensis AWRI1499
----------------
Hanseniaspora uvarum DSM 2768
----------------
Hanseniaspora guilliermondii
---------------------
-
Hanseniaspora opuntiae
----------------
Hanseniaspora osmophila
----------------
Hanseniaspora valbyensis NRRL Y-1626
--------------------
-
Debaryomyces fabryi
-------------------
Debaryomyces hansenii CBS767
-------------------
Candida tropicalis MYA-3404
-------------------
-
Candida albicans SC5314 Cand_albi_SC5314_V4
----------------
----
Candida parapsilosis
-----------------------
Lodderomyces elongisporus NRRL YB-4239
-------------
---------
Spathaspora passalidarum NRRL Y-27907
------------------------
Meyerozyma guilliermondii ATCC 6260
------------------------
Scheffersomyces stipitis CBS 6054
------------------------
Babjeviella inositovora NRRL Y-12698
------------------------------
------------
Millerozyma farinosa CBS 7064
---------------------
Hyphopichia burtonii NRRL Y-1933
---------------------
Suhomyces tanzawaensis NRRL Y-17324
-----------------
-
Kazachstania naganishii CBS 8797
----------------
Kazachstania africana CBS 2517
-----------------
-
Naumovozyma castellii CBS 4309
----------------
Naumovozyma dairenensis CBS 421
-----------------
-
Lachancea dasiensis CBS 10888
----------------
Lachancea lanzarotensis
----------------
-
Eremothecium gossypii ATCC 10895
-------------
----
Eremothecium gossypii FDAG1
--------------------
Eremothecium cymbalariae DBVPG#7215
-----------------
-
Tetrapisispora phaffii CBS 4417
----------------
Tetrapisispora blattae CBS 6284
----------------
Kluyveromyces marxianus DMKU3-1042
-----------------
-
Kluyveromyces dobzhanskii CBS 2104
----------
----
Kluyveromyces lactis
----------------
Zygosaccharomyces rouxii ASM2636v1
-----------------
-
Zygosaccharomyces parabailii
----------------
Zygosaccharomyces bailii CLIB 213
----------------
Saccharomyces cerevisiae S288C
----------------
Saccharomyces eubayanus
-----------------
-
Saccharomyces kudriavzevii IFO 1802
----------------
Saccharomyces arboricola H-6
----------------
Saccharomyces sp. 'boulardii' ASM129837v2
---------------------
Vanderwaltozyma polyspora DSM 70294
----
------------------
Saccharomycetaceae sp. 'Ashbya aceri'
------------------------
Torulaspora delbrueckii
------------------------
Pachysolen tannophilus NRRL Y-2460
------------------------
[Candida] glabrata ASM254v2
-------------------------
Tortispora caseinolytica NRRL Y-17796
-------------------------
Yarrowia lipolytica YALIA101
-------------------------
Ascoidea rubescens DSM 1968
-------------------------
Lipomyces starkeyi NRRL Y-11557
-------------
Pneumocystis murina B123
-------------
-
Pneumocystis carinii B80
----------------
Pneumocystis jirovecii RU7
----------------
Schizosaccharomyces japonicus yFS275
-------------
-
Schizosaccharomyces pombe 972h-
------------------------------------------
----
Schizosaccharomyces cryophilus OY26
-------------
Schizosaccharomyces octosporus yFS286
--------------
Protomyces lactucaedebilis
--------------
Saitoella complicata NRRL Y-17804 Scomplicata_3.0
--------------
Neolecta irregularis DAH-3
----------
-
Puccinia graminis f. sp. tritici 04KEN156/4
-------------
Puccinia graminis f. sp. tritici CRL 75-36-700-3
----------
-----
Puccinia sorghi
-----------------
Puccinia striiformis
----------
--------
Puccinia triticina 1-1 BBBD Race 1
--------------------
Puccinia coronata var. avenae f. sp. avenae
---------------------
Melampsora larici-populina 98AG31
-------------
-
Rhodotorula graminis WP1
------------------
-------
Rhodotorula toruloides ATCC 204091
-----------------
-
-
Microbotryum intermedium
-------------------
Microbotryum lychnidis-dioicae p1A1 Lamole
--------------------
Leucosporidium creatinivorum
-------------------------
Mixia osmundae IAM 14324 Mosmundae_2.0
-------------
-
Moesziomyces aphidis DSM 70725
----------------
Moesziomyces antarcticus T-34
-------------
-
Ustilago maydis 521
-------------
----
Ustilago hordei
--------------------
Pseudozyma hubeiensis SY62
-------------
--------
Sporisorium reilianum SRZ2
-----------------------
Anthracocystis flocculosa PF-1
-----------------------
Kalmanozyma brasiliensis GHG001
------------------------
Testicularia cyperi
----------------
Malassezia vespertilionis
---------------------
-
Malassezia globosa CBS 7966
----------------
Malassezia pachydermatis
----------------
Malassezia sympodialis ATCC 42132 ASM34930v2
----------------
-
Jaminaea rosea
------------------
-------
Pseudomicrostroma glucosiphilum
----------------
-
Acaromyces ingoldii
-------------------
Meira miltonrushii
-------------------
Tilletia indica
-----------------
-
-
Tilletia walkeri
-------------------
Tilletia controversa
-------------------
Tilletia caries
--------------------
Ceraceosorus guamensis
--------------------
Tilletiopsis washingtonensis
--------------------
Tilletiaria anomala UBC 951
-------------------------
Violaceomyces palustris
-----------------------
--------------------
-
Wallemia mellicola CBS 633.66
-------------
Wallemia ichthyophaga EXF-994
---------------------
-
Cutaneotrichosporon oleaginosum
----------------
Trichosporon asahii var. asahii CBS 8904
----------------
Kwoniella bestiolae CBS 10118
----------------
-
Kwoniella dejecticola CBS 10117
--------------
-------
Kwoniella pini CBS 10737
-------------------
Cryptococcus gattii WM276
----------------
-
-
Cryptococcus amylolentus CBS 6039
----------------------
Cryptococcus neoformans var. neoformans JEC21
----------------------
Cryptococcus depauperatus CBS 7841
-------------
--------
Tsuchiyaea wingfieldii CBS 7118
---------------------
Naematelia encephala
---------------------
Kockovaella imperatae
---------------------
Tremella mesenterica DSM 1558
-------------
-
Calocera viscosa TUFC12733
----------------------
----
Calocera cornea HHB12733
-----------------
Dacryopinax primogenitus
---------------------
-
Piloderma croceum F 1598
----------------
Fibularhizoctonia sp. CBS 109695
----------------
-
Pisolithus tinctorius Marx 270
----------------
----
Pisolithus microcarpus 441
-----------------------
Scleroderma citrinum Foug A
-------------------
-
Paxillus involutus ATCC 200175
-------------
-
----
Paxillus rubicundulus Ve08.2h10
-----------------------
Hydnomerulius pinastri MD-312
-
-----------------
-
Suillus luteus UH-Slu-Lm8-n1
-------------------
Rhizopogon vesiculosus
--------------------
-
Coniophora puteana RWD-64-598 SS2
----------------
Serpula lacrymans var. lacrymans S7.3
--------------------
-
Gymnopus luxurians FD-317 M1
-------
----------
Lentinula edodes
-----------------
-
Galerina marginata CBS 339.88
----------------
Hypholoma sublateritium FD-334 SS-4
-----------------
-
Agaricus bisporus var. burnettii JB137-S8
----------------
Leucoagaricus sp. SymC.cos
----------
--------
-
Amanita thiersii Skay4041
-------------------
Amanita muscaria Koide BX008
--------------------
-
Laccaria bicolor S238N-H82
-------------------
Laccaria amethystina LaAM-08-1
-------------------
Armillaria solidipes
-------------
----
-
Armillaria ostoyae
----------------
----
Armillaria gallica
-----------------------
Cylindrobasidium torrendii FP15055 ss-10
--------------------
-
Moniliophthora roreri MCA 2997
-------------------
Moniliophthora perniciosa FA553
--------------------
-
Hypsizygus marmoreus
-------------------
Termitomyces sp. J132
------------------------
Hebeloma cylindrosporum h7
------------------------
Fistulina hepatica ATCC 64428
------------------------
Pleurotus ostreatus PC15
------------------------
Schizophyllum commune H4-8
------------------------
Coprinopsis cinerea okayama7#130
-------------------------
Jaapia argillacea MUCL 33604
-------------------------
Plicaturopsis crispa FD-325 SS-3
---------------------
-
Neolentinus lepideus HHB14362 ss-1
----------------
Gloeophyllum trabeum ATCC 11539
----------------
-
Fomitiporia mediterranea MF3/22
-----------------
----
Pyrrhoderma noxium
--------------------
Schizopora paradoxa
---------------------
-
Serendipita indica DSM 11827
----------------
Serendipita vermifera MAFF 305830
-------
------------
-
Sistotremastrum niveocremeum HHB9708
-------------
Sistotremastrum suecicum HHB10207 ss-3
-------------
Botryobasidium botryosum FD-172 SS1
------------------
-
Tulasnella calospora MUT 4182
-------------
Rhizoctonia solani AG-1 IA
-------------
Heterobasidion irregulare TC 32-1
------------------
-
Stereum hirsutum FP-91666 SS1
-------------
Peniophora sp. CONT
-----------------
-
Daedalea quercina L-15889
-------
-------
Fomitopsis pinicola FP-58527 SS1
-----------------
-
Wolfiporia cocos MD-104 SS10
----------------
Laetiporus sulphureus 93-53
-----------------
-
Phlebiopsis gigantea 11061_1 CR5-6
----------------
Phanerochaete carnosa HHB-10118-sp
----------------
Trametes pubescens
----------------
-
Trametes cinnabarina
----------
-------
Trametes versicolor FP-101664 SS1
-------------
----
Trametes coccinea BRFM310
--------------------
Ganoderma sinense ZZ0214-1
--------------------
Dichomitus squalens LYAD-421 SS1
---------------------
Gelatoporia subvermispora B
---------------------
Grifola frondosa
---------------------
Phlebia centrifuga
---------------------
Fibroporia radiculosa
---------------------
Postia placenta Mad-698-R
----------------------
Exidia glandulosa HHB12029
----------------------
Punctularia strigosozonata HHB-11173 SS5
-----------------------
Sphaerobolus stellatus SS14
-----------------------
-
Catenaria anguillulae PL171
----------
Allomyces macrogynus ATCC 38327
-----------------------
-
Conidiobolus coronatus NRRL 28638
----------
Basidiobolus meristosporus CBS 931.73
-----------------------
-
Paramicrosporidium saccamoebae
----------
Rozella allomycis CSF55
----------
-
Piromyces sp. E2
----------
----
Piromyces finnis
-----------------
Neocallimastix californiae
-----------------
Anaeromyces robustus
---------------
----
-
Batrachochytrium salamandrivorans
----------
----
Batrachochytrium dendrobatidis JEL423
---