Statistics on protein trees

The protein tree pipeline is described at the following page.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Tuber melanosporum Mel28

Tuber magnatum

Tuber borchii

Arthrobotrys oligospora ATCC 24927

Drechslerella stenobrocha 248

Dactylellina haptotyla CBS 200.50

Talaromyces atroroseus

Talaromyces stipitatus ATCC 10500

Talaromyces marneffei ATCC 18224

Talaromyces islandicus

Talaromyces cellulolyticus

Rasamsonia emersonii CBS 393.64

Penicillium antarcticum

Penicillium camemberti FM 013

Penicillium brasilianum Pbras_Allpaths-LG

Aspergillus clavatus NRRL 1

Aspergillus fischeri NRRL 181

Aspergillus terreus NIH2624

Aspergillus flavus NRRL3357

Aspergillus oryzae RIB40

Aspergillus fumigatus

Aspergillus nidulans FGSC A4 ASM1142v1

Aspergillus niger ASM285v2

Penicilliopsis zonata CBS 506.65

Byssochlamys spectabilis No. 5

Elaphomyces granulatus

Paracoccidioides lutzii Pb01

Paracoccidioides brasiliensis Pb18

Coccidioides posadasii str. Silveira

Coccidioides immitis H538.4

Trichophyton verrucosum HKI 0517

Trichophyton mentagrophytes

Trichophyton violaceum

Trichophyton tonsurans CBS 112818

Trichophyton interdigitale MR816

Trichophyton rubrum CBS 118892

Trichophyton benhamiae CBS 112371

Trichophyton soudanense CBS 452.61

Trichophyton equinum CBS 127.97

Nannizzia gypsea CBS 118893

Microsporum canis CBS 113480

Blastomyces silveriae

Emmonsia crescens UAMH 3008

Emmonsia sp. CAC-2015a

Blastomyces percursus

Blastomyces gilchristii SLH14081

Blastomyces dermatitidis ER-3

Polytolypa hystricis UAMH7299

Emergomyces pasteurianus Ep9510

Helicocarpus griseus UAMH5409

Histoplasma capsulatum NAm1

Uncinocarpus reesii 1704

Ascosphaera apis ARSEF 7405

Capronia coronata CBS 617.96

Capronia epimyces CBS 606.96

Phialophora americana

Phialophora attae

Cladophialophora yegresii CBS 114405

Cladophialophora psammophila CBS 110553

Cladophialophora immunda

Cladophialophora carrionii

Cladophialophora bantiana CBS 173.52

Fonsecaea pedrosoi CBS 271.37

Fonsecaea multimorphosa CBS 102226

Fonsecaea monophora

Fonsecaea erecta

Fonsecaea nubica

Exophiala mesophila

Exophiala sideris

Exophiala oligosperma

Exophiala dermatitidis NIH/UT8656

Exophiala spinifera

Exophiala aquamarina CBS 119918

Exophiala xenobiotica

Rhinocladiella mackenziei CBS 650.93

Cyphellophora europaea CBS 101466

Phaeomoniella chlamydospora

Endocarpon pusillum Z07020

Ceratocystis platani

Thielaviopsis punctulata

Lomentospora prolificans

Scedosporium apiospermum

Verticillium dahliae VdLs.17

Verticillium longisporum vl2.denovo.v1

Colletotrichum graminicola M1.001

Colletotrichum higginsianum

Colletotrichum fructicola Nara gc5

Colletotrichum orbiculare MAFF 240422

Stachybotrys chlorohalonata IBT 40285

Stachybotrys chartarum IBT 40288

Fusarium verticillioides 7600

Fusarium fujikuroi EF1

Fusarium graminearum CS3005v1

Fusarium pseudograminearum CS3096

Fusarium culmorum CS7071

[Nectria] haematococca mpVI 77-13-4

Fusarium oxysporum f. sp. lycopersici 4287 FO2

Neonectria ditissima

Acremonium chrysogenum ATCC 11550

Ustilaginoidea virens Assembly_for_version_1_of_the_Villosiclava_virens_genome

Trichoderma longibrachiatum ATCC 18648

Trichoderma parareesei

Trichoderma gamsii

Trichoderma atroviride IMI 206040

Trichoderma citrinoviride

Trichoderma virens Gv29-8

Trichoderma harzianum ASM98886v1

Trichoderma guizhouense

Trichoderma asperellum CBS 433.97

Trichoderma reesei QM6a

Escovopsis weberi

Cordyceps sp. RAO-2017

Cordyceps militaris CM01

Cordyceps fumosorosea ARSEF 2679

Beauveria brongniartii RCEF 3172

Cordyceps confragosa RCEF 1005

Beauveria bassiana ASM168263v1

Metarhizium robertsii ARSEF 23

Metarhizium majus ARSEF 297

Metarhizium rileyi RCEF 4871

Metarhizium album ARSEF 1941

Metarhizium acridum CQMa 102

Torrubiella hemipterigena

Claviceps purpurea 20.1

Moelleriella libera RCEF 2490

Pochonia chlamydosporia 170

Ophiocordyceps camponoti-rufipedis

Ophiocordyceps australis OphauG2

Tolypocladium capitatum

Tolypocladium paradoxum

Tolypocladium ophioglossoides CBS 100239

Drechmeria coniospora

Hirsutella minnesotensis 3608

Purpureocillium lilacinum ASM165320v1

Hypoxylon sp. CI-4A

Daldinia sp. EC12

Pestalotiopsis fici W106-1

Microdochium bolleyi

Pseudomassariella vexata

Eutypa lata UCREL1

Rosellinia necatrix

Gaeumannomyces tritici R3-111a-1

Pyricularia oryzae 70-15

Magnaporthiopsis poae ATCC 64411

Sporothrix insectorum RCEF 264

Sporothrix brasiliensis 5110

Sporothrix schenckii ATCC 58251

Ophiostoma piceae UAMH 11346

Grosmannia clavigera kw1407

Diaporthe helianthi

Diaporthe ampelina

Valsa mali var. pyri

Coniella lustricola

Neurospora crassa OR74A

Neurospora tetrasperma FGSC 2509

Sordaria macrospora k-hell

Chaetomium thermophilum var. thermophilum DSM 1495

Chaetomium globosum CBS 148.51

Thermothelomyces thermophilus ATCC 42464

Thielavia terrestris NRRL 8126

Madurella mycetomatis

Coniochaeta ligniaria NRRL 30616

Phaeoacremonium minimum UCRPA7

Oidiodendron maius Zn

Amorphotheca resinae ATCC 22711

Erysiphe necator

Erysiphe pulchra

Blumeria graminis f. sp. hordei DH14

Sclerotinia borealis F-4128

Sclerotinia sclerotiorum 1980 UF-70 ASM14694v1

Botrytis cinerea B05.10

Hyaloscypha variabilis F

Meliniomyces bicolor E

Glarea lozoyensis ATCC 20868

Diplocarpon rosae

Marssonina brunnea f. sp. 'multigermtubi' MB_m1

Phialocephala scopiformis

Phialocephala subalpina

Rhynchosporium agropyri

Rhynchosporium secalis

Rhynchosporium commune

Cadophora sp. DSE1049

Rutstroemia sp. NJR-2017a WRK4

Rutstroemia sp. NJR-2017a BBW

Rutstroemia sp. NJR-2017a BVV2

Pezoloma ericae

Rachicladosporium sp. CCFEE 5018

Rachicladosporium antarcticum

Baudoinia panamericana UAMH 10762

Hortaea werneckii EXF-2000

Pseudocercospora musae

Pseudocercospora fijiensis CIRAD86

Zymoseptoria brevis

Zymoseptoria tritici IPO323

Cercospora berteroae

Cercospora zeina

Cercospora beticola

Ramularia collo-cygni

Sphaerulina musiva SO2202

Dothistroma septosporum NZE10

Pseudocercospora eumusae

Aureobasidium namibiae CBS 147.97

Aureobasidium melanogenum CBS 110374

Aureobasidium pullulans EXF-150

Aureobasidium subglaciale EXF-2481

Elsinoe australis

Diplodia seriata UCDDS831v0.1

Diplodia corticola

Neofusicoccum parvum UCRNP2

Macrophomina phaseolina MS6

Coniosporium apollinis CBS 100218

Acidomyces richmondensis BFW

Periconia macrospinosa

Stagonospora sp. SRC1lsM3a

Paraphaeosphaeria sporulosa

Epicoccum nigrum

Ascochyta rabiei

Pyrenophora tritici-repentis Pt-1C-BFP

Pyrenophora teres f. teres 0-1

Bipolaris zeicola 26-R-13

Bipolaris victoriae FI3

Bipolaris maydis C5

Bipolaris oryzae ATCC 44560

Bipolaris sorokiniana ND90Pr

Stemphylium lycopersici

Exserohilum turcica Et28A

Alternaria alternata

Leptosphaeria maculans JN3

Parastagonospora nodorum SN15

Pyrenochaeta sp. DS3sAY3a

Corynespora cassiicola Philippines

Clohesyomyces aquaticus

Xylona heveae TC161

Sugiyamaella lignohabitans

Wickerhamiella sorbophila

[Candida] auris ASM118947v1

Clavispora lusitaniae ATCC 42720

Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

Nadsonia fulvescens var. elongata DSM 6958

Kuraishia capsulata CBS 1993

Komagataella phaffii GS115 ASM174695v1

Komagataella phaffii GS115 GCA_000027005.1

Wickerhamomyces ciferrii

Wickerhamomyces anomalus NRRL Y-366-8

Cyberlindnera fabianii ASM320585v1

Cyberlindnera jadinii

Pichia membranifaciens NRRL Y-2026

Pichia kudriavzevii ASM76445v1

Ogataea parapolymorpha DL-1

Ogataea polymorpha

Brettanomyces bruxellensis AWRI1499

Hanseniaspora uvarum DSM 2768

Hanseniaspora guilliermondii

Hanseniaspora opuntiae

Hanseniaspora osmophila

Hanseniaspora valbyensis NRRL Y-1626

Debaryomyces fabryi

Debaryomyces hansenii CBS767

Candida tropicalis MYA-3404

Candida albicans SC5314 Cand_albi_SC5314_V4

Candida parapsilosis

Lodderomyces elongisporus NRRL YB-4239

Spathaspora passalidarum NRRL Y-27907

Meyerozyma guilliermondii ATCC 6260

Scheffersomyces stipitis CBS 6054

Babjeviella inositovora NRRL Y-12698

Millerozyma farinosa CBS 7064

Hyphopichia burtonii NRRL Y-1933

Suhomyces tanzawaensis NRRL Y-17324

Kazachstania naganishii CBS 8797

Kazachstania africana CBS 2517

Naumovozyma castellii CBS 4309

Naumovozyma dairenensis CBS 421

Lachancea dasiensis CBS 10888

Lachancea lanzarotensis

Eremothecium gossypii ATCC 10895

Eremothecium gossypii FDAG1

Eremothecium cymbalariae DBVPG#7215

Tetrapisispora phaffii CBS 4417

Tetrapisispora blattae CBS 6284

Kluyveromyces marxianus DMKU3-1042

Kluyveromyces dobzhanskii CBS 2104

Kluyveromyces lactis

Zygosaccharomyces rouxii ASM2636v1

Zygosaccharomyces parabailii

Zygosaccharomyces bailii CLIB 213

Saccharomyces cerevisiae S288C

Saccharomyces eubayanus

Saccharomyces kudriavzevii IFO 1802

Saccharomyces arboricola H-6

Saccharomyces sp. 'boulardii' ASM129837v2

Vanderwaltozyma polyspora DSM 70294

Saccharomycetaceae sp. 'Ashbya aceri'

Torulaspora delbrueckii

Pachysolen tannophilus NRRL Y-2460

[Candida] glabrata ASM254v2

Tortispora caseinolytica NRRL Y-17796

Yarrowia lipolytica YALIA101

Ascoidea rubescens DSM 1968

Lipomyces starkeyi NRRL Y-11557

Pneumocystis murina B123

Pneumocystis carinii B80

Pneumocystis jirovecii RU7

Schizosaccharomyces japonicus yFS275

Schizosaccharomyces pombe 972h-

Schizosaccharomyces cryophilus OY26

Schizosaccharomyces octosporus yFS286

Protomyces lactucaedebilis

Saitoella complicata NRRL Y-17804 Scomplicata_3.0

Neolecta irregularis DAH-3

Puccinia graminis f. sp. tritici 04KEN156/4

Puccinia graminis f. sp. tritici CRL 75-36-700-3

Puccinia sorghi

Puccinia striiformis

Puccinia triticina 1-1 BBBD Race 1

Puccinia coronata var. avenae f. sp. avenae

Melampsora larici-populina 98AG31

Rhodotorula graminis WP1

Rhodotorula toruloides ATCC 204091

Microbotryum intermedium

Microbotryum lychnidis-dioicae p1A1 Lamole

Leucosporidium creatinivorum

Mixia osmundae IAM 14324 Mosmundae_2.0

Moesziomyces aphidis DSM 70725

Moesziomyces antarcticus T-34

Ustilago maydis 521

Ustilago hordei

Pseudozyma hubeiensis SY62

Sporisorium reilianum SRZ2

Anthracocystis flocculosa PF-1

Kalmanozyma brasiliensis GHG001

Testicularia cyperi

Malassezia vespertilionis

Malassezia globosa CBS 7966

Malassezia pachydermatis

Malassezia sympodialis ATCC 42132 ASM34930v2

Jaminaea rosea

Pseudomicrostroma glucosiphilum

Acaromyces ingoldii

Meira miltonrushii

Tilletia indica

Tilletia walkeri

Tilletia controversa

Tilletia caries

Ceraceosorus guamensis

Tilletiopsis washingtonensis

Tilletiaria anomala UBC 951

Violaceomyces palustris

Wallemia mellicola CBS 633.66

Wallemia ichthyophaga EXF-994

Cutaneotrichosporon oleaginosum

Trichosporon asahii var. asahii CBS 8904

Kwoniella bestiolae CBS 10118

Kwoniella dejecticola CBS 10117

Kwoniella pini CBS 10737

Cryptococcus gattii WM276

Cryptococcus amylolentus CBS 6039

Cryptococcus neoformans var. neoformans JEC21

Cryptococcus depauperatus CBS 7841

Tsuchiyaea wingfieldii CBS 7118

Naematelia encephala

Kockovaella imperatae

Tremella mesenterica DSM 1558

Calocera viscosa TUFC12733

Calocera cornea HHB12733

Dacryopinax primogenitus

Piloderma croceum F 1598

Fibularhizoctonia sp. CBS 109695

Pisolithus tinctorius Marx 270

Pisolithus microcarpus 441

Scleroderma citrinum Foug A

Paxillus involutus ATCC 200175

Paxillus rubicundulus Ve08.2h10

Hydnomerulius pinastri MD-312

Suillus luteus UH-Slu-Lm8-n1

Rhizopogon vesiculosus

Coniophora puteana RWD-64-598 SS2

Serpula lacrymans var. lacrymans S7.3

Gymnopus luxurians FD-317 M1

Lentinula edodes

Galerina marginata CBS 339.88

Hypholoma sublateritium FD-334 SS-4

Agaricus bisporus var. burnettii JB137-S8

Leucoagaricus sp. SymC.cos

Amanita thiersii Skay4041

Amanita muscaria Koide BX008

Laccaria bicolor S238N-H82

Laccaria amethystina LaAM-08-1

Armillaria solidipes

Armillaria ostoyae

Armillaria gallica

Cylindrobasidium torrendii FP15055 ss-10

Moniliophthora roreri MCA 2997

Moniliophthora perniciosa FA553

Hypsizygus marmoreus

Termitomyces sp. J132

Hebeloma cylindrosporum h7

Fistulina hepatica ATCC 64428

Pleurotus ostreatus PC15

Schizophyllum commune H4-8

Coprinopsis cinerea okayama7#130

Jaapia argillacea MUCL 33604

Plicaturopsis crispa FD-325 SS-3

Neolentinus lepideus HHB14362 ss-1

Gloeophyllum trabeum ATCC 11539

Fomitiporia mediterranea MF3/22

Pyrrhoderma noxium

Schizopora paradoxa

Serendipita indica DSM 11827

Serendipita vermifera MAFF 305830

Sistotremastrum niveocremeum HHB9708

Sistotremastrum suecicum HHB10207 ss-3

Botryobasidium botryosum FD-172 SS1

Tulasnella calospora MUT 4182

Rhizoctonia solani AG-1 IA

Heterobasidion irregulare TC 32-1

Stereum hirsutum FP-91666 SS1

Peniophora sp. CONT

Daedalea quercina L-15889

Fomitopsis pinicola FP-58527 SS1

Wolfiporia cocos MD-104 SS10

Laetiporus sulphureus 93-53

Phlebiopsis gigantea 11061_1 CR5-6

Phanerochaete carnosa HHB-10118-sp

Trametes pubescens

Trametes cinnabarina

Trametes versicolor FP-101664 SS1

Trametes coccinea BRFM310

Ganoderma sinense ZZ0214-1

Dichomitus squalens LYAD-421 SS1

Gelatoporia subvermispora B

Grifola frondosa

Phlebia centrifuga

Fibroporia radiculosa

Postia placenta Mad-698-R

Exidia glandulosa HHB12029

Punctularia strigosozonata HHB-11173 SS5

Sphaerobolus stellatus SS14

Catenaria anguillulae PL171

Allomyces macrogynus ATCC 38327

Conidiobolus coronatus NRRL 28638

Basidiobolus meristosporus CBS 931.73

Paramicrosporidium saccamoebae

Rozella allomycis CSF55

Piromyces sp. E2

Piromyces finnis

Neocallimastix californiae

Anaeromyces robustus

Batrachochytrium salamandrivorans

Batrachochytrium dendrobatidis JEL423