▼

Favourite species

All species

Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Export data

Share this page

Bookmark this page

.

Transcript: CAK38971

.

Location

SuperContig AM270983: 2,150,284-2,152,948 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 32 domains and features.

Gene

This transcript is a product of gene An04g08840 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	CAK38971	2547	848aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3F3RSA7 A2QJZ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Exons

.

Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence

Markup

loadingloaded

▼▲

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........gctaaccctggctttgtagccgctgcaacctgcgagccctgtctacaaca
1	CAK38971-1	2,152,948	2,151,591	0	2	1,358	ATGGCTCCGAATCTCCGTTCGTCGTCGCACGCCTGGTCGAATAACTCTCGCCCCTCCACT CCACTTGGCGCGCCAACTACCGCAAGCACTGCTTCCTCGCTCACCGATTCTACAAGGCCT CGCAAGCAACGCCGCACTGGCTGGAACAGTCGTGTGGCCACCGATCCTCTCCAGGATCCG CCCTCTCGTACCCAGTCGCGTTTGGAACAATCTAAGAATGAGGTGTCGGATACTCTGAGC GATTCAAACATCTTTGAAAGCAGTAGCGGATGGGTTGAACCACCATTGAGAGAACCAGAA CCGAGCTTCGCAGACACGCCATGGTGTAATGTGTCTCATCACGCGAACCCCGTATTGTCC AGTATGCGCCCACTGGGAACCATGCCATCAACTGCCGACTTGCGCAAGGCTGGACTGGCA CCCATCAAACCCAGTGTTCAGAATATCTCTGCGAAAAAGGAGTCACAGGCCACACCGAAC GGCGAGGGAGCTGACAACAAGCCTCAGACCCCCTTAACGCCCGCTGAGGAGCCGATGGAC GAACCTCTACCTACGAAGTCTAAGGTCTCACCGGACATGTCTGCTTTCACTTCACTGCCT GTGCCTACATCGACAGAAGTAGACGTTGATCGGATTAAAATTGCGGTCGAAAAGGCTCTT CGACTGGCGCTTGAGACCAACAATCGCCCTGTTTCACGCGGCCTCATCAGATTGTGGGAG ACGTGCAACAAAGATCCCTTTGCGCTTTCTATTCTTGACGGCATTTGCCAGGAAAATCCC GGCCCGCGGGAACGTTCGGCTTTCCAGAGTGTTATGCGCGCTGCATGGAAGGAGGTTCAG GCGGAAGCCGACGAGGAGTTTGCCACGGCACCGGTCTTGGCTCGCCCCCGGTCGGCCAGC AGCATTTCATCTCTCTCTTCAGCGGTTTCCCTTGATGCTGAGACTTTTGCCCCGGGCATG GCTCCTGGAGCGGCAACTTCCCGTGCTCGCGCCAGGGGTAAACCGGCTAAAAGGGGTGCA CCTTCGGCAAAGGAGAAGGAGTCAGCCGCCCCGTCTAGTGCTGCTACGGCTCTCCCACAG AAGCATGCACTGGAAGATGAATCGAACCCCGAGGAAGGGGCACGAATCAAACGTACTCGC CTGCAGAAGCCTCTCCCGACCATTGTCGCATTGGAAAGTCACATGCGTTCCTCATTGACT TCTGACCCACAGCAGTCTAATGTGCCATCTCCTGTCCCCACTGCAGCCAGTCGATCTCAG CCAGCATCACTGGGAGCTGGCATGAGTAGCAGACAGCGCTCTGAGAGTCCAGCTAGTAGT GATGCCGGTGACAATCGACGACTGACACCTACCCTGAC
	Intron 1-2	2,151,590	2,151,535			56	gtaagtcccccttgtctatctacca..........cctctgaacgctaacatgctggcag
2	CAK38971-2	2,151,534	2,150,755	2	2	780	AAGCGACAACGAACGCCAGGAAAACAACGACTTTTGTCACAATTGTAACGGAAGCGGCCA GCTGCTGTGTTGCGATGGCTGCCCGAATTCTTTCCATTTCTCCTGCCTTAACCCGCCCTT GGACCCGGCAAACCCCCCAGAGGGAGATTGGTTTTGCCCGAAATGCTCGTTGTCAAAGCC TATGACGTCCTTACTGGGTGCTCTAGACAACGCTCCACAGAAAGACTTCCTCCTACCCCT TGGTGTTCGCGATTACTTCACCGGTGTGGCTACGGGAGATGAGGACAAATATGATGAGGT CGTGCCACTTCCCAAGCTCTACCCCCGCCGAGGGAACCGCCATGGCCGTTATGATGACCC TTACCTACTACGAACACAGGATGCCAAAGGCAATGTGATTCTCTGCGCAGCTTGCGGTCG CACGAGTAACGGCCGTCAGCCCATAATTCAGTGCGACTATTGTCCTTGTGCTTTCCACAT GGATTGTTGTGACCCGCCTCTGCCCCTACCTCCCATCCAGAAAGGCGGCAGTGATCGTAG GCACCACAGTTGGATGTGTCCCAACCACGTCTGGCATGATTTAAAATACTGGGTTAAAGA TGAGGAGGGATACGATATGTTAAAGCGCATTCGTCGTCCGAAGCGACCCCGCATGATCGA CGTTGAAGTCCTTCCAGATGAGGAAGAGGTCGAGAGAATGGAGGAACAGGAGGAGGAAGG TATCATGTACCGTGTGTCAGAGCGCGGTCTAAAATTGGACTTCATTCATCGAGTTAAGAG
	Intron 2-3	2,150,754	2,150,693			62	gtgagttgattcctaggcgttatag..........ctgacttgtctgacttgtggagaag
3	CAK38971-3	2,150,692	2,150,284	2	0	409	GGAAAATGAGGAGTACAAGATGATGAAGGAAACTGCGGACAGATATTTCGACTATGCCAC CGCAGAGTTCGACAAGCTGCTGGCCAAGGCCCATGCCTTCTACTCGTCCCAGAAGCCTGT TTTTCTGGAAGAGGACACAACTGCTGCGATCTTGAACTCACGCACTATCGCTGAACGGGA AGCGGCCGCAAACCTCATCTCACTCGCACAGGGCAACGGACCTACTAGGCAAGGGCCTGA AGATGGAAAGATCGGTTTGCTTATAGATCAGCTCAAGGCAAACGCTCCGCCCGATCTTCC CTCGGCCAACACGGAGATCGCCTCTCTTCGTGCTCTACAGAATCTAATTGAACAACGCAT TGCGGTGCTGAATGCGCAGCCCGAGCCGCCCCAGCCAGGCAGCACTTAG
	3' downstream sequence						tccatcgccgttccattaatcaaataatttcaagcatcatcacagtcaaa..........

.