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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
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Transcript: CAL00672

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Location

SuperContig AM270983: 487,266-488,873 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 24 domains and features.

Gene

This transcript is a product of gene An04g01850 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	CAL00672	1422	473aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2QI07	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........aactatataaacccgttaccaccagcgtctgatccgtgtctcctcatacc
1	CAL00672-1	487,266	487,358	0	0	93	ATGTCCGAACCTACCCCCGCTGGAGCTGCCTTGAGCAATGGCTCCGAGAGCACCAGCACA CCAAATGTCAATACTGGAGATAACGCGTCAGGG
	Intron 1-2	487,359	487,418			60	gtgagcttccctttgtagggtcaag..........gctgatatatatcgttattttctag
2	CAL00672-2	487,419	487,538	0	0	120	CTCTTTCAAACCCTGCAAGGTCATGTCGACGATATCCGTTCTCTCCTACAATGCGGCGTT TGCATCCGACCACTTTATGAACCCTATACCCTTGCCTGCGGACATACCTTTTGCTACAGT
	Intron 2-3	487,539	487,597			59	gtcagtatcgccaatctcgacgaca..........tttggcgtctaacctttcgctctag
3	CAL00672-3	487,598	487,690	0	0	93	TGTCTAACATCATGGTTTGTTGGTGGGAGGCACAACAAGACATGCCCGGACTGTCGAGCA CCGGTGAAAGCGCAACCAGCTCCCGCTTACTTG
	Intron 3-4	487,691	487,757			67	gtaggcctctgcatatcatacttgt..........acaggcactaactaaaatactcaag
4	CAL00672-4	487,758	488,873	0	0	1,116	GTCCGCGCTGTTGTTCAAATGTTCACAAGTCGCCCGGAGCTGCTTGATAAGGGCGAGACC ACAGACGAACACCTAAGCCATCAACGCGAAGAAGCGGAGCGACTGGAAAAAGACAAGGCC AACACACACCCGCGGGAAGGGGGCCTGTTCCGTGGTACGTTCAACAAGAAGCTTCCAGTC GCGCAACCTATCGTGGACCTCGAGGACAATGTTGTGCGTTGTCCACGTTGTTCCTGGGAG CTAGAGGAAGATGAAGGATGTGCACAATGCGGGTATCGACAAGATGATGAGTCTGTGACT GGAAGTTCAGGCTGGAGTGAGTCAGACGAAAACTCCGAGATGACGGACTATTTGGAAGAC GATGATGAGATTGAAGATGGGTTTGGGGACGCGGATGAATATGGCTGGGATCCTAGCCAT GACCAGCTGCCCCTTGATATTCAACCTGCCGACATAGACCAACTTTATCGTCAGTGGTAT GGCCTAGCGCCTGGCGACCTTCCGGGTGTGCGCACAACTGGGCCTTTTCGCCGGCAGAAC CATTATGGCTGGCCTTCTGGAGTTTCGTCAGCTCTCGAGGAAGATAGCGACATGGATGAT GAGGACGAGGATGCAGACATGGATTCGTTCATCGACGATGACTTGGAACACGATGATTAT TCCGAATCTGACCGATCCACAGTGGTTGGGCGGCATGAAATTTCGGTCACCCACACTATT GGAACTGACTTGTCAACCTTTGATGAGATGTCTGAAGAAAGCGACGAGGAGAGCCTGGAC GATGAAAGTCATGATGACGACGACGATGACGATGACGATGACGACGAGGATCCGATTCTG CCTCCTGTTGGTGGCATTCGGCGCAATCGCATCCAAACCTACCGAATACAGTCGAGTTCG CCATCTTGCGAGAATGGGACTTCCGGTACAGCGTCGGGACGCAGTGAATCCAGATCCCAG GGAGATATCCGTCATGATCCACGGTTACAACAGCAAGTGTCCGCTGGATCTACTGTCATG AATGCAATCAGCGTGGATGACGATTCTGACGAAGGCCCCGTGCGACCAACTAGGCGGACA AGAGACAGGGGCAATCGCCGACCCTCGGCCTATTAA
	3' downstream sequence						atcaccccgacaactcatctacgattctaatgacgattgatattacttcc..........

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