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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
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Transcript: CAK38905

Location

SuperContig AM270983: 1,854,105-1,855,295 forward strand.

About this transcript

This transcript has 1 exon and is annotated with 23 domains and features.

Gene

This transcript is a product of gene An04g07490 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	CAK38905	1191	396aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2QJL5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Domains & features

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	1	17	-	PS50294	-
PROSITE profiles	129	166	-	PS50294	-
PROSITE profiles	203	235	-	PS50294	-
PANTHER	1	376	DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1	PTHR46202	IPR042238 [Display all genes with this domain]
Prints	1	15	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
Prints	149	163	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
Prints	222	236	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
PROSITE profiles	1	17	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	25	73	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	39	71	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	122	162	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	126	162	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	129	171	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	194	235	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
PROSITE profiles	203	244	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
Pfam	204	235	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	311	360	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
PROSITE patterns	1	15	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	1	359	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	1	362	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type	Start	End
MobiDBLite	360	380
Seg	362	385
Alphafold	1	396

Personal Data

Transcript: CAK38905

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Transcript: CAK38905

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