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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
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- Population comparison
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Transcript: CAG81759 YALI0_C05038g-1

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Description

YALI0C05038p

Location

Chromosome C: 644,542-646,422 reverse strand.

About this transcript

This transcript has 1 exon and is annotated with 28 domains and features.

Gene

This transcript is a product of gene YALI0_C05038g Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
YALI0_C05038g-1	CAG81759	1881	626aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6CD04	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	1	24	-	3.30.160.60	-
CDD	139	265	-	cd00009	-
CDD	272	326	-	cd18139	-
Gene3D	272	343	-	1.10.8.60	-
Gene3D	418	521	-	1.20.272.10	-
Gene3D	522	619	-	1.10.3710.10	-
PANTHER	5	602	AAA ATPase RarA/MGS1/WRNIP1	PTHR13779	IPR051314 [Display all genes with this domain]
Pfam	399	443	AAA C-terminal domain	PF16193	IPR032423 [Display all genes with this domain]
SMART	155	272	AAA+ ATPase domain	SM00382	IPR003593 [Display all genes with this domain]
Pfam	159	266	ATPase, AAA-type, core	PF00004	IPR003959 [Display all genes with this domain]
Superfamily	428	603	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SSF48019	IPR008921 [Display all genes with this domain]
Pfam	444	601	MgsA AAA+ ATPase C-terminal	PF12002	IPR021886 [Display all genes with this domain]
Gene3D	113	271	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Superfamily	122	331	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
SMART	1	25	Rad18, zinc finger UBZ4-type	SM00734	IPR006642 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	24	56
MobiDBLite	24	128
MobiDBLite	60	78
MobiDBLite	335	352
MobiDBLite	335	403
MobiDBLite	353	372
MobiDBLite	379	403
Seg	94	120
Seg	331	371
Seg	602	619
Alphafold	1	626
Alphafold	1	626
Ncoils	187	207

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