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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
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Transcript: EGY15678

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Description

RNA polymerase II transcription factor B subunit 3

Location

SuperContig DS572708: 800,792-801,853 reverse strand.

About this transcript

This transcript has 1 exon and is annotated with 16 domains and features.

Gene

This transcript is a product of gene VDAG_06842 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	EGY15678	1062	353aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G2X9L0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	13	72	-	SSF57850	-
PANTHER	13	325	-	PTHR12683	-
CDD	14	68	-	cd16573	-
Pfam	66	217	Cdk-activating kinase assembly factor MAT1, centre	PF06391	IPR015877 [Display all genes with this domain]
NCBIFAM	15	321	Cdk-activating kinase assembly factor MAT1/Tfb3	TIGR00570	IPR004575 [Display all genes with this domain]
TIGRFAM	15	321	Cdk-activating kinase assembly factor MAT1/Tfb3	TIGR00570	IPR004575 [Display all genes with this domain]
Pfam	14	62	Zinc finger, RING-type	PF17121	IPR001841 [Display all genes with this domain]
PROSITE profiles	16	58	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
PROSITE patterns	37	46	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Gene3D	12	78	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type	Start	End
MobiDBLite	147	192
Seg	81	91
Seg	165	196
Alphafold	1	353
Ncoils	123	157
Ncoils	168	195

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