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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: EHK17421 TRIVIDRAFT_42827/EHK17421

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Description

hypothetical protein

Location

SuperContig 88: 73,868-76,039 forward strand.

About this transcript

This transcript has 5 exons and is annotated with 27 domains and features.

Gene

This transcript is a product of gene TRIVIDRAFT_42827 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
TRIVIDRAFT_42827/EHK17421	EHK17421	1902	633aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G9N6S0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	175	254	-	1.10.246.120	-
Gene3D	581	633	-	1.10.8.10	-
Pfam	185	249	RABX5, catalytic core helical domain	PF18151	IPR041545 [Display all genes with this domain]
Superfamily	582	626	UBA-like superfamily	SSF46934	IPR009060 [Display all genes with this domain]
SMART	590	632	Ubiquitin system component CUE	SM00546	IPR003892 [Display all genes with this domain]
PROSITE profiles	590	633	Ubiquitin system component CUE	PS51140	IPR003892 [Display all genes with this domain]
Pfam	593	632	Ubiquitin system component CUE	PF02845	IPR003892 [Display all genes with this domain]
PROSITE profiles	289	428	VPS9 domain	PS51205	IPR003123 [Display all genes with this domain]
SMART	322	437	VPS9 domain	SM00167	IPR003123 [Display all genes with this domain]
Pfam	324	423	VPS9 domain	PF02204	IPR003123 [Display all genes with this domain]
Superfamily	164	438	VPS9 domain superfamily	SSF109993	IPR037191 [Display all genes with this domain]
Gene3D	285	447	VPS9 domain superfamily	1.20.1050.80	IPR037191 [Display all genes with this domain]
CDD	590	631	Vacuolar protein sorting-associated protein 9, CUE domain	cd14369	IPR041804 [Display all genes with this domain]
PANTHER	10	586	Vacuolar protein sorting-associated protein 9-like	PTHR23101	IPR045046 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	20
MobiDBLite	1	93
MobiDBLite	21	40
MobiDBLite	108	160
MobiDBLite	448	494
MobiDBLite	456	494
Seg	80	97
Seg	153	162
Seg	255	283
Seg	522	538
Seg	552	561
Seg	565	583
Alphafold	1	633

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