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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: EGR47921 TRIREDRAFT_62809-1

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Description

predicted protein

Location

SuperContig GL985066: 446,390-449,425 forward strand.

About this transcript

This transcript has 1 exon and is annotated with 33 domains and features.

Gene

This transcript is a product of gene TRIREDRAFT_62809 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
TRIREDRAFT_62809-1	EGR47921	3036	1011aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G0RLR1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	728	765	-	PS50294	-
PANTHER	13	987	Cerebral cortical development WD repeat-containing protein	PTHR45589	IPR052779 [Display all genes with this domain]
SMART	141	178	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	184	225	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	188	224	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	430	473	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	489	527	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	530	571	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	578	615	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	629	665	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	668	718	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	721	763	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
PROSITE profiles	728	772	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
Pfam	730	763	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
Superfamily	149	483	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Superfamily	460	764	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	38	268	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]
Gene3D	307	578	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]
Gene3D	594	794	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	23
MobiDBLite	1	30
MobiDBLite	768	906
MobiDBLite	803	870
MobiDBLite	887	906
MobiDBLite	981	1003
MobiDBLite	981	1011
Seg	66	78
Seg	103	112
Seg	275	292
Seg	851	863
Seg	866	884
Seg	1001	1011
Alphafold	1	1011

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