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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
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- Population comparison
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Transcript: CBQ72714 sr13393-1

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Description

conserved hypothetical protein

Location

Chromosome 5: 381,260-383,386 reverse strand.

About this transcript

This transcript has 1 exon and is annotated with 26 domains and features.

Gene

This transcript is a product of gene sr13393 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
sr13393-1	CBQ72714	2127	708aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E6ZZN4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	78	165	-	SSF57850	-
PANTHER	69	266	RNF E3 ubiquitin-protein ligase	PTHR46016	IPR051438 [Display all genes with this domain]
Superfamily	254	324	TRAF-like	SSF49599	IPR008974 [Display all genes with this domain]
SMART	83	137	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	83	138	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
PROSITE patterns	99	108	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Pfam	83	114	Zinc finger, RING-type, eukaryotic	PF13445	IPR027370 [Display all genes with this domain]
Gene3D	68	196	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	197	247	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
Gene3D	248	320	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]
PROSITE profiles	243	288	Zinc finger, TRAF-type	PS50145	IPR001293 [Display all genes with this domain]
Pfam	243	294	Zinc finger, TRAF-type	PF02176	IPR001293 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	50
MobiDBLite	8	50
MobiDBLite	492	547
MobiDBLite	495	547
Seg	2	43
Seg	118	140
Seg	413	429
Seg	444	453
Seg	521	539
Seg	584	600
Seg	663	679
Seg	682	697
Alphafold	1	708
Ncoils	333	353

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