Schizosaccharomyces pombe (ASM294v2)
Description

ubiquitin-protein ligase E3 (predicted) [Source:PomBase;Acc:SPAPB17E12.03]

Location
About this transcript

This transcript has 3 exons, is annotated with 10 domains and features and is associated with 18 variant alleles.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
-SPAPB17E12.03.12133343aa
 
Protein coding
Q8TFH8 -Ensembl Canonical
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 TATAGCATACGTTTGTTTATAGGGAAAAAATTAAAATTGATAGCTTGTTTTAAATATGTT     60
       ............................................................       
       ............................................................       

                                                                          
    61 TTTAGGATATTATTCCATTAAATAACTGTTTAAAATTTCAGTTTTTATTTGCAAATTTAC    120
       ............................................................       
       ............................................................       

                                                                          
   121 ATTCAGTCCTTTCCTTGCTTCAACGCACTTGTCTAAGGAGCTATTCAGTCAATGGATTCG    180
       ...................................................ATGGATTCG      9
       ...................................................-M--D--S-      3

                                                                          
   181 CCTTCATTATTGGAAGTTTTACAAGTTCAACAGGTGGAAAAACTTATATCACCTTCATTA    240
    10 CCTTCATTATTGGAAGTTTTACAAGTTCAACAGGTGGAAAAACTTATATCACCTTCATTA     69
     4 -P--S--L--L--E--V--L--Q--V--Q--Q--V--E--K--L--I--S--P--S--L-     23

                                                                          
   241 AGGTTTATACTAGCATATTTCACACATCGATATCCAAGATTTTTATTACGGGCATATAAT    300
    70 AGGTTTATACTAGCATATTTCACACATCGATATCCAAGATTTTTATTACGGGCATATAAT    129
    24 -R--F--I--L--A--Y--F--T--H--R--Y--P--R--F--L--L--R--A--Y--N-     43

                                                                          
   301 TCTTTTGATGGTATTTATTTATTGGTAAAACTTTTACTTGAGAAATCTCAGCTTAAAAAA    360
   130 TCTTTTGATGGTATTTATTTATTGGTAAAACTTTTACTTGAGAAATCTCAGCTTAAAAAA    189
    44 -S--F--D--G--I--Y--L--L--V--K--L--L--L--E--K--S--Q--L--K--K-     63

                                                                          
   361 TGGAATGCTACATCTGTTGAAAGAAGGTTTCAACTCAAACGAGTAATAGCGGTTCGTGAC    420
   190 TGGAATGCTACATCTGTTGAAAGAAGGTTTCAACTCAAACGAGTAATAGCGGTTCGTGAC    249
    64 -W--N--A--T--S--V--E--R--R--F--Q--L--K--R--V--I--A--V--R--D-     83

                                                                          
   421 AGTAGTATAATCGCTGAGGAATTCCCACAAGAATCAGAGTCCGCTACTTCGCTCAATGGG    480
   250 AGTAGTATAATCGCTGAGGAATTCCCACAAGAATCAGAGTCCGCTACTTCGCTCAATGGG    309
    84 -S--S--I--I--A--E--E--F--P--Q--E--S--E--S--A--T--S--L--N--G-    103

                                                                          
   481 ATTGACGTGTTAAAAAAGTTGTTTTTAACTTATTGCATACCATATTTGCTTGAAAAGTGC    540
   310 ATTGACGTGTTAAAAAAGTTGTTTTTAACTTATTGCATACCATATTTGCTTGAAAAGTGC    369
   104 -I--D--V--L--K--K--L--F--L--T--Y--C--I--P--Y--L--L--E--K--C-    123

                                                                          
   541 GAATCGTTAACAACGGTTAAAGAAAATCATACTGCCGTTTCTATTCTCTCATTACAGGCT    600
   370 GAATCGTTAACAACGGTTAAAGAAAATCATACTGCCGTTTCTATTCTCTCATTACAGGCT    429
   124 -E--S--L--T--T--V--K--E--N--H--T--A--V--S--I--L--S--L--Q--A-    143

                                                                          
   601 CGTGACAAGCAGAAAGGGGCTTTAAGTGTATTTTATTCGAAAATTAAGATCCTACTTGTC    660
   430 CGTGACAAGCAGAAAGGGGCTTTAAGTGTATTTTATTCGAAAATTAAGATCCTACTTGTC    489
   144 -R--D--K--Q--K--G--A--L--S--V--F--Y--S--K--I--K--I--L--L--V-    163

                                                                          
   661 AGGTTGAAGAAAATTTTGCATTTTGTATTTCGTTTGATAAGAAAATCTAATACCTACTTA    720
   490 AGGTTGAAGAAAATTTTGCATTTTGTATTTCGTTTGATAAGAAAATCTAATACCTACTTA    549
   164 -R--L--K--K--I--L--H--F--V--F--R--L--I--R--K--S--N--T--Y--L-    183

                                                                          
   721 CAGTGGTTGTACTATTTACTTTATGCTTTGGGTAAAACTCCTTATACAAACCTTGCTGAT    780
   550 CAGTGGTTGTACTATTTACTTTATGCTTTGGGTAAAACTCCTTATACAAACCTTGCTGAT    609
   184 -Q--W--L--Y--Y--L--L--Y--A--L--G--K--T--P--Y--T--N--L--A--D-    203

                                                                          
   781 CACATATTAAGACAACGTGTGATTTATAATGTGGAAAATATCCATTCTCGAAAACTAATT    840
   610 CACATATTAAGACAACGTGTGATTTATAATGTGGAAAATATCCATTCTCGAAAACTAATT    669
   204 -H--I--L--R--Q--R--V--I--Y--N--V--E--N--I--H--S--R--K--L--I-    223

                                                                          
   841 TCTACCAGAGAGAAATCTTCTCTATTAACGTCTATTGCCGATCACAGCATGGAAGGATTT    900
   670 TCTACCAGAGAGAAATCTTCTCTATTAACGTCTATTGCCGATCACAGCATGGAAGGATTT    729
   224 -S--T--R--E--K--S--S--L--L--T--S--I--A--D--H--S--M--E--G--F-    243

                                                                          
   901 TTGATCATTATACAATTGATTGATTGGTGGCAATCTAATAATTATGAATCTCATCTTAAA    960
   730 TTGATCATTATACAATTGATTGATTGGTGGCAATCTAATAATTATGAATCTCATCTTAAA    789
   244 -L--I--I--I--Q--L--I--D--W--W--Q--S--N--N--Y--E--S--H--L--K-    263

                                                                          
   961 AAAGGGGAAGTCGCTTTTACTGAATTGGCACCGCCAAAGTTACCTTTTGAGATTAATGTT   1020
   790 AAAGGGGAAGTCGCTTTTACTGAATTGGCACCGCCAAAGTTACCTTTTGAGATTAATGTT    849
   264 -K--G--E--V--A--F--T--E--L--A--P--P--K--L--P--F--E--I--N--V-    283

                                                                          
  1021 TCCACTACCGACATTTGTAAAATATGTGGAGAAAAAATAAAAAATCCAGCGGTTTTGTCG   1080
   850 TCCACTACCGACATTTGTAAAATATGTGGAGAAAAAATAAAAAATCCAGCGGTTTTGTCG    909
   284 -S--T--T--D--I--C--K--I--C--G--E--K--I--K--N--P--A--V--L--S-    303

                                                                          
  1081 ACCGGTTTCGTCTTCTGTTACCCATGCATTCAAGTATGGTTACAGCGACATCCATTCAAA   1140
   910 ACCGGTTTCGTCTTCTGTTACCCATGCATTCAAGTATGGTTACAGCGACATCCATTCAAA    969
   304 -T--G--F--V--F--C--Y--P--C--I--Q--V--W--L--Q--R--H--P--F--K-    323

                                                                          
  1141 TGTCCTGTAACGAATTTGGAATTATCAAGAAAAGGCGAATCCTTTTGGAGACTAATGATT   1200
   970 TGTCCTGTAACGAATTTGGAATTATCAAGAAAAGGCGAATCCTTTTGGAGACTAATGATT   1029
   324 -C--P--V--T--N--L--E--L--S--R--K--G--E--S--F--W--R--L--M--I-    343

                                                                          
  1201 TAAAAGCTCTGCTTTTTCATTTTTACTTTTATTATTTTCTAAGCAGAAGGTTGAGGGATA   1260
  1030 TAA.........................................................   1032
       -*-.........................................................    343

                                                                          
  1261 CTTTACTACTTCGTGGCAGTATTCCACAACTTTTGCACATCTTCAACTAGCTGATTATGT   1320
       ............................................................       
       ............................................................       

                                                                          
  1321 ATGGTATTTTTTGGTTGTGAGATGGTGAATACCTCATTAACCATGTCAATTTTTCCATTT   1380
       ............................................................       
       ............................................................       

                                                                          
  1381 ACACGTTCATCAATGATCAATCCAACCAATGCTTGTTCAATAATAGAAATAGAGACACCT   1440
       ............................................................       
       ............................................................       

                                                                          
  1441 AGTTTCTTAGCAAGCAAGCTCAGCTTCACCGAAGTATACGGCTTAACTAATTCAATCAAC   1500
       ............................................................       
       ............................................................       

                                                                          
  1501 ACCTGGCTTCTTATGCTATACAAAATTTTGTCAACATATTGACGAATAAAATCATCGTCC   1560
       ............................................................       
       ............................................................       

                                                                          
  1561 AAAATATCGTGTTGATAGGTTTGGAGTATTCTTTCAACTGCAGTTATATCACGGATTTGG   1620
       ............................................................       
       ............................................................       

                                                                          
  1621 TATGCTTCCACTAGTTTTGTCATAGCAATGATATGCGGATTATCCTTATAAGGTTGAGTC   1680
       ............................................................       
       ............................................................       

                                                                          
  1681 TCTGGAGAATCGAATGGATTAATTTCAGATTCGCTAAGCATGTTGGCCAAAACTAGATAC   1740
       ............................................................       
       ............................................................       

                                                                          
  1741 TTCAAAACGCGAATTCTATCCGAAGAACCGGCCTCATCATATGATTTAAAAGACTCAAAA   1800
       ............................................................       
       ............................................................       

                                                                          
  1801 AAATTTGTTTGAGCTTCTGACCATTGATTTTCTTGCATATGCATTTTACCTCCGCACTCC   1860
       ............................................................       
       ............................................................       

                                                                          
  1861 CTAATGATACCCATAATTCGGGGATGCGGTATTGCAGTTTTTACTCGTAGTGAACTTTGA   1920
       ............................................................       
       ............................................................       

                                                                          
  1921 TATAATTCTTTTAGCCGTTTGTTATCTTCAATATCGGAATACATTTGGATTTCTAGAGAA   1980
       ............................................................       
       ............................................................       

                                                                          
  1981 TACAACTCTAAAAGATGAGTTCCACGGTTTTGATCTGCAACAGAATTATTTTCGTCCGAC   2040
       ............................................................       
       ............................................................       

                                                                          
  2041 AAAAGCTCATGCATTTGCCGTAATAAATACTTAAATTTGTGATAGTTCTTTTGAGTAAGG   2100
       ............................................................       
       ............................................................       

                                                                          
  2101 AGGAAACGTGCCACGTGCATTAAAACTTTTAGC                              2133
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