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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
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- General identifiers
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- Transcript history
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Transcript: EEB06083 SJAG_01122-1

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Description

WD repeat protein Rrb1

Location

SuperContig supercont5.3: 1,009,224-1,011,029 reverse strand.

About this transcript

This transcript has 1 exon and is annotated with 22 domains and features.

Gene

This transcript is a product of gene SJAG_01122 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
SJAG_01122-1	EEB06083	1806	479aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6JZT3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	286	322	-	PS50294	-
PROSITE profiles	382	417	-	PS50294	-
PANTHER	47	478	Glutamate-rich WD repeat-containing	PTHR45903	IPR051972 [Display all genes with this domain]
Pfam	85	151	Histone-binding protein RBBP4, N-terminal	PF12265	IPR022052 [Display all genes with this domain]
SMART	173	214	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	233	272	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	276	319	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	286	319	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	286	328	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	324	365	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	329	365	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	375	415	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	377	415	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	382	417	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
Superfamily	176	474	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	80	477	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type	Start	End
MobiDBLite	1	15
MobiDBLite	1	65
MobiDBLite	30	65
Seg	36	60
Seg	157	168
Alphafold	1	479

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