
Puccinia triticina - GCA_000151525.2 Assembly and Gene Annotation
About Puccinia triticina
Wheat leaf rust is a fungal disease that affects wheat, barley, rye stems, leaves and grains. In temperate zones it is destructive on winter wheat because the pathogen overwinters. Infections can lead up to 20% yield loss. The pathogen is a Puccinia rust fungus. It is the most prevalent of all the wheat rust diseases, occurring in most wheat-growing regions. It causes serious epidemics in North America, Mexico and South America and is a devastating seasonal disease in India. P. triticina is heteroecious, requiring two distinct hosts.
Picture credit: Public domain via Wikimedia Commons (Image source) Taxonomy ID 630390
(Text from Wikipedia.)
More information General information about this species can be found in Wikipedia
Assembly
The Puccinia triticina (race 1, isolate 1-1) genome was generated and assembled by Broad Institute of MIT and released in July 2010 consisting of a 16X whole-genome shotgun assembly with a size of 162.95 Mb.
Annotation
The annotation has been imported from VEuPathDB.
References
- Gene discovery in EST sequences from the wheat leaf rust fungus
Puccinia triticina sexual spores, asexual spores and haustoria,
compared to other rust and corn smut
fungi.
Xu J, Linning R, Fellers J, Dickinson M, Zhu W, Antonov I, Joly DL, Donaldson ME, Eilam T, Anikster Y et al. 2011. BMC Genomics. 12:161.
Statistics
Summary
Assembly | GCA000151525v2, INSDC Assembly GCA_000151525.2, |
Database version | 115.2 |
Golden Path Length | 135,343,689 |
Genebuild by | VEuPathDB FungiDB |
Genebuild method | Import |
Data source | GenBank |
Gene counts
Coding genes | 14,878 |
Non coding genes | 683 |
Small non coding genes | 683 |
Pseudogenes | 131 |
Gene transcripts | 16,499 |