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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
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Transcript: EFP92677 PGTG_18192/EFP92677

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Description

RING-box protein 1

Location

SuperContig supercont2.109: 42,443-43,765 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features and is associated with 119 variant alleles.

Gene

This transcript is a product of gene PGTG_18192 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
PGTG_18192/EFP92677	EFP92677	878	113aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E3L802	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	25	110	-	SSF57850	-
CDD	45	106	-	cd16485	-
PANTHER	20	109	RING-box E3 Ubiquitin Ligase	PTHR11210	IPR051031 [Display all genes with this domain]
Pfam	45	103	Zinc finger, RING-H2-type	PF12678	IPR024766 [Display all genes with this domain]
PROSITE profiles	58	103	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
Gene3D	16	113	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	17
MobiDBLite	1	23
Alphafold	1	113
Alphafold	1	113

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