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Gene: PGTG_20332

Description

hypothetical protein

Location

SuperContig supercont2.245: 10,435-11,496 forward strand.

ASM14992v1:AAWC01004409.1

About this gene

This gene has 1 transcript (splice variant), 9 orthologues, 1 paralogue and is a member of 1 Ensembl protein family.

Transcripts

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Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
PGTG_20332/EFP94376	EFP94376	976	271aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E3NXS7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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ConsequencesAll
Consequences

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PTV = Protein Truncating Variant
(0)

transcript ablation
(0)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(0)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(0)

splice region variant
(0)

splice donor region variant
(0)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(0)

stop retained variant
(0)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(0)

5 prime UTR variant
(0)

3 prime UTR variant
(0)

non coding transcript exon variant
(0)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(3)

upstream gene variant
(0)

downstream gene variant
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LocationAll
Location

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supercont2.245:5435 - supercont2.245:16496
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ClassAll
Class

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Only Somatic
Not Somatic
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(3)
SNP
(0)
deletion
(0)
genetic marker
(0)
indel
(0)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
No data
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SourceAll
Source

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(2/2 on)
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(3)
Broad-7a
(0)
No data
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EvidenceAll
Evidence

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(0)
1000Genomes
(0)
HapMap
(0)
Cited
(0)
ESP
(0)
ExAC
(0)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
Phenotype_or_Disease
(0)
TOPMed
(3)
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Clinical SignificanceAll
Clinical Significance

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(0)
uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
protective
(0)
pathogenic
(3)
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AA coordAll
AA coord

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1 - 270
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TranscriptAll
Transcript

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(3)
EFP94376
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Filter Other ColumnsAll
- Location
- Class
- Source
- Evidence
- Clinical Significance
- AA coord
- Transcript

Variant ID	Chr: bp	Alleles	Class	Source	Evidence	Clin. Sig.	Conseq. Type	AA	AA coord	Transcript

tmp_supercont2.245_5558	supercont2.245:5558	A/T	SNP	Broad-7a	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	EFP94376
tmp_supercont2.245_6397	supercont2.245:6397	A/T	SNP	Broad-7a	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	EFP94376
tmp_supercont2.245_7553	supercont2.245:7553	T/C	SNP	Broad-7a	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	EFP94376

Gene: PGTG_20332

Variant table

Variant table

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Gene: PGTG_20332

Variant table

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