▼

Favourite species

All species

Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

.

Transcript: SNOT_12873

.

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0U5U1]

Location

SuperContig supercont1.24: 179,456-187,132 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 17 domains and features.

Gene

This transcript is a product of gene SNOG_12873 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	SNOT_12873	7197	2398aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0U5U1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	1433	1785	-	3.90.70.10	-
Superfamily	1436	1790	Papain-like cysteine peptidase superfamily	SSF54001	IPR038765 [Display all genes with this domain]
Pfam	1441	1781	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PF00443	IPR001394 [Display all genes with this domain]
Pfam	1913	2298	Ubiquitin C-terminal hydrolase-like, DUF3517	PF12030	IPR021905 [Display all genes with this domain]
PANTHER	1407	1821	Ubiquitin carboxyl-terminal hydrolases	PTHR24006	IPR050164 [Display all genes with this domain]
PROSITE profiles	1441	1784	Ubiquitin specific protease domain	PS50235	IPR028889 [Display all genes with this domain]
PROSITE patterns	1702	1719	Ubiquitin specific protease, conserved site	PS00973	IPR018200 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	1	86
MobiDBLite	40	83
MobiDBLite	2373	2398
Seg	8	22
Seg	447	465
Seg	1757	1766
Seg	1896	1902
Seg	1946	1964
Seg	2067	2077
Seg	2107	2118

.

Personal Data