Phaeosphaeria nodorum Assembly and Gene Annotation

About Phaeosphaeria nodorum SN15

Phaeosphaeria nodorum is a major fungal pathogen of wheat, causing the disease Septoria nodorum blotch. It is a member of the Dothideomycetes, a large fungal taxon that includes many important plant pathogens affecting all major crop plant families.

Picture credit: Public domain via Wikimedia Commons (Image source) Taxonomy ID 321614

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Annotation

Annotation of Phaeosphaeria nodorum is provided by the Broad Institute. Non coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied. EST sequences were mapped to the genome using Exonerate.

References

1. Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum.
   Bringans S, Hane JK, Casey T, Tan KC, Lipscombe R, Solomon PS, Oliver RP. 2009. BMC Bioinformatics. 10:301.
2. Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum.
   Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE et al. 2007. Plant Cell. 19:3347-3368.
3. Quantitative proteomic analysis of G-protein signalling in Stagonospora nodorum using isobaric tags for relative and absolute quantification.
   Casey T, Solomon PS, Bringans S, Tan KC, Oliver RP, Lipscombe R.
   1. Proteomics. 10:38-47.

Other Data

'Expressed Sequence Tags' (ESTs) from dbEST are aligned to the genome using Exonerate.

More information

General information about this species can be found in Wikipedia.