Melampsora larici-populina Assembly and Gene Annotation

About Melampsora larici-populina 98AG31

Taxonomy ID 747676

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The genome sequence and assembly of the Melampsora larici-populina genome have been generated by the JGI under funding of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory.

Annotation

The protein coding gene annotation of the Melampsora larici-populina genome have been generated by the JGI. The gene models were imported from the annotation submitted to EMBL-Bank as the whole shotgun sequencing set AECX00000000.

Non-coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

References

1. Obligate biotrophy features unraveled by the genomic analysis of rust fungi.
   Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL et al. 2011. Proc. Natl. Acad. Sci. U.S.A.. 108:9166-9171.

Other Data

'Expressed Sequence Tags' (ESTs) from dbEST are aligned to the genome using Exonerate.