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Sequence
Protein Information
- Protein summary
- Domains & features
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- PDB 3D protein model
- AlphaFold predicted model
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Transcript: CBY00980

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Description

Similar to Vps18 protein [Source:UniProtKB/TrEMBL;Acc:E5ABD9]

Location

SuperContig FP929138: 2,471,081-2,473,144 forward strand.

About this transcript

This transcript has 2 exons and is annotated with 9 domains and features.

Gene

This transcript is a product of gene LEMA_P021100.1 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	CBY00980	1917	638aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E5ABD9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	3	636	-	PTHR23323	-
CDD	535	619	-	cd16462	-
PROSITE profiles	294	456	Clathrin, heavy chain/VPS, 7-fold repeat	PS50236	IPR000547 [Display all genes with this domain]
Pfam	325	429	Clathrin, heavy chain/VPS, 7-fold repeat	PF00637	IPR000547 [Display all genes with this domain]
Pfam	1	64	Pep3/Vps18/deep orange, beta-propeller domain	PF05131	IPR007810 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Seg	145	156
Seg	473	485
Alphafold	1	638
Ncoils	486	527

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