Dothistroma septosporum Assembly and Gene Annotation

About Dothistroma septosporum NZE10

Dothistroma septosporum or Mycosphaerella pini is a fungus that causes the disease commonly known as red band needle blight. This fungal disease affects the needles of conifers, but is mainly found on pine. Over 60 species have been reported to be prone to infection and Corsican Pine is the most susceptible species in Great Britain.

Picture credit: No known copyright restrictions via Wikimedia Commons (Image source) Taxonomy ID 675120

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

The Dothistroma septosporum (strain NZE10) genome was generated and assembled by JGI and released in September 2010 consisting of a whole-genome shotgun assembly with a size of 30.21 Mb and submitted to INSDC as GCA_000340195.1.

The assembly and protein coding gene annotation of the Dothistroma septosporum genome was imported from the annotation submitted to INSDC as the WGS project AIEN00000000.1. The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.

Non-coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

References

1. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
   Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F et al. 2012. PLoS Pathog.. 8:e1003037.
2. The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.
   de Wit PJ, van der Burgt A, kmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP et al. 2012. PLoS Genet.. 8:e1003088.

Picture credit: Rosie Bradshaw - Massey University

More information

General information about this species can be found in Wikipedia.