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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: AAW42726

Description

shuttle craft like transcriptional regulator, putative

Location

Chromosome 3: 1,720,614-1,725,028 forward strand.

About this transcript

This transcript has 7 exons and is annotated with 42 domains and features.

Gene

This transcript is a product of gene CNC05810 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	AAW42726	4116	1223aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5KJP4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Domains & features

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	626	675	-	cd06008	-
CDD	766	811	-	cd06008	-
CDD	876	928	-	cd06008	-
CDD	989	1034	-	cd06008	-
CDD	1017	1069	-	cd06008	-
CDD	1128	1185	-	cd02325	-
Pfam	1126	1185	R3H domain	PF01424	IPR001374 [Display all genes with this domain]
Superfamily	1118	1211	R3H domain superfamily	SSF82708	IPR036867 [Display all genes with this domain]
Gene3D	1118	1215	R3H domain superfamily	3.30.1370.50	IPR036867 [Display all genes with this domain]
PANTHER	1	1186	Transcription factor NFX1 family	PTHR12360	IPR034078 [Display all genes with this domain]
SMART	577	595	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]
SMART	636	657	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]
SMART	712	733	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]
SMART	776	794	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]
SMART	886	905	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]
SMART	943	963	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]
SMART	999	1019	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]
SMART	1028	1050	Zinc finger, NF-X1-type	SM00438	IPR000967 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	16
MobiDBLite	1	144
MobiDBLite	62	81
MobiDBLite	99	113
MobiDBLite	179	195
MobiDBLite	179	198
MobiDBLite	248	296
MobiDBLite	260	286
MobiDBLite	334	428
MobiDBLite	337	368
MobiDBLite	369	394
MobiDBLite	411	428
MobiDBLite	1200	1223
Seg	1	17
Seg	22	37
Seg	61	74
Seg	99	115
Seg	177	191
Seg	350	364
Seg	577	593
Seg	932	943
Seg	949	962
Seg	1194	1208
Alphafold	1	1223

Personal Data

Transcript: AAW42726

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Transcript: AAW42726

Domains & features

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