Colletotrichum gloeosporioides (GCA_000319635.1)

Colletotrichum gloeosporioides Assembly and Gene Annotation

Colletrotrichum gloeosporioides is the anamorph of Glomerella cingulata. It causes quince and apple bitter rot and anthracnose on many fruit and vegetables.

The genome assembly and protein coding gene annotation were produced by RIKEN Plant Science Center and imported from the assembly submitted to the INSDC as GCA_000319635.1

Non-coding RNA genes have been annotated using tRNAScan-SE (Lowe, T.M. and Eddy, S.R. 1997), RFAM (Griffiths-Jones et al 2005), and RNAmmer (Lagesen K.,et al 2007); additional analysis tools have also been applied.

References

  1. Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift of Colletotrichum fungi.
    Gan P, Ikeda K, Irieda H, Narusaka M, O'Connell RJ, Narusaka Y, Takano Y, Kubo Y, Shirasu K. 2013. New Phytol.. 197:1236-1249.

Picture credit: USDA Forest Service

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyColletotrichum gloeosporioides Nara gc-5, INSDC Assembly GCA_000319635.1, Dec 2012
Database version100.1
Base Pairs55,393,111
Golden Path Length55,607,143
Genebuild byRIKEN
Genebuild methodImport
Data sourceRIKEN

Gene counts

Coding genes15,381
Non coding genes946
Small non coding genes944
Misc non coding genes2
Pseudogenes92
Gene transcripts16,419

About this species