Bipolaris maydis C5 (GCA_000338975) (CocheC5_3)

Bipolaris maydis C5 (GCA_000338975) Assembly and Gene Annotation

About Bipolaris maydis C5 (GCA_000338975)

Wikipedia

Cochliobolus heterostrophus is a fungal plant pathogen. It can cause southern corn leaf blight in maize.

Cochliobolus heterstrophus is found in many tropical regions and in the southern part of the US. Cochliobolus, although not currently the most economically serious disease, can be a very serious crop disease. C. heterostrophus (race O) was considered a mild pathogen of corn, and was of little worry to those growing maize crops. It was not until the 1970s that C. heterostrophus (race T) destroyed more than 15% of the U.S. corn crop. Race T differed from race O in the sense that it produced T-toxin (host-selective toxin). The corn planted in the 1970s carried T-cms; T-cms was particularly susceptible to T-toxin. T-toxin is considered to be related to a family of linear polyketides.

This organism's appeal among genetic analysts lends itself to the organism's superior tractability when "homologous recombination between transforming DNA and target genomic sequences" takes place. This "facilitates functional analysis by site-specific gene deletion."

(Text and image from Wikipedia, the free encyclopaedia.)

Assembly

The assembly presented is the CocheC5_3 assembly submitted to INSDC with the assembly accession GCA_000338975.1.

Annotation

The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_000338975.1, with additional non-coding genes derived from Rfam. For more details, please visit INSDC annotation import.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyCocheC5_3, INSDC Assembly GCA_000338975.1,
Database version98.1
Base Pairs36,324,454
Golden Path Length36,456,735
Genebuild by22
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes13,311
Non coding genes341
Small non coding genes340
Long non coding genes1
Pseudogenes16
Gene transcripts13,673

About this species