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Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
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Transcript: CAK41230

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Location

SuperContig AM270991: 1,873,079-1,877,437 reverse strand.

About this transcript

This transcript has 2 exons and is annotated with 32 domains and features.

Gene

This transcript is a product of gene An12g07800 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	CAK41230	4278	1425aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2R092	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	115	151	-	PS50294	-
PROSITE profiles	202	235	-	PS50294	-
PANTHER	4	1315	GATOR complex protein WDR59-like	PTHR46170	IPR049567 [Display all genes with this domain]
SMART	18	55	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	59	101	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	108	148	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	112	148	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	115	157	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	152	191	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	195	235	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	198	235	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	202	244	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	292	341	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Superfamily	28	343	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Pfam	1255	1314	WDR59/RTC1-like, RING zinc finger domain	PF17120	IPR049566 [Display all genes with this domain]
PROSITE profiles	1256	1305	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	381	403
MobiDBLite	671	696
MobiDBLite	713	738
MobiDBLite	923	958
MobiDBLite	1078	1099
MobiDBLite	1160	1195
MobiDBLite	1181	1195
MobiDBLite	1331	1425
MobiDBLite	1411	1425
Seg	388	401
Seg	566	575
Seg	671	692
Seg	959	972
Seg	1025	1034
Seg	1167	1178
Seg	1382	1397

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