Aspergillus nidulans (ASM1142v1)

Aspergillus nidulans Assembly and Gene Annotation

About the Aspergillus nidulans genome

Aspergillus nidulans (also called Emericella nidulans when referring to its sexual form, or teleomorph) is one of many species of filamentous fungi in the phylum Ascomycota. It has been an important research organism for studying eukaryotic cell biology for over 50 years, being used to study a wide range of subjects including recombination, DNA repair, mutation, cell cycle control, tubulin, chromatin, nucleokinesis, pathogenesis, metabolism and experimental evolution.

Picture credit: Aspergillus/Aspergillosis Website owned by the Fungal Research Trust

A European consortium called Eurofungbase, together with the University of Manchester, sequenced the Aspergillus nidulans strain FGSC-4A genome using whole genome shotgun (WGS) sequencing. The genome is ~29.8 Mbp and assembled into 8 chromosomes.

References

  1. CADRE: the Central Aspergillus Data REpository.
    Mabey JE, Anderson MJ, Giles PF, Miller CJ, Attwood TK, Paton NW, Bornberg-Bauer E, Robson GD, Oliver SG, Denning DW. 2004. Nucleic Acids Res.. 32:D401-5.
  2. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
    Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, ..., Dyer P, Sachs MS, Osmani SA, Birren BW. 2005. Nature. 438:1105-1115.
  3. The 2008 update of the Aspergillus nidulans genome annotation: a community effort.
    Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, ..., Brandt BW, Cornell MJ, van den Hondel CA, Visser J et al. 2009. Fungal Genet. Biol.. 46 Suppl 1:S2-13.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyASM1142v1, INSDC Assembly GCA_000011425.1, Feb 2015
Database version94.1
Base Pairs29,828,291
Golden Path Length29,828,291
Genebuild byEnsemblFungi
Genebuild methodGenerated from ENA annotation
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes10,534
Non coding genes231
Small non coding genes229
Long non coding genes2
Pseudogenes63
Gene transcripts10,828

About this species