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Aspergillus clavatus NRRL 1 (ASM271v1)

Aspergillus clavatus NRRL 1 Assembly and Gene Annotation

About the Aspergillus clavatus genome

*Aspergillus clavatus* is a species of Aspergillus with conidia dimensions 3--4.5 x 2.5--4.5 ╬╝ms. It is found in soil and animal manure. The fungus can produce the toxin patulin, which may be associated with disease in humans and animals. This species is only occasionally pathogenic.

Picture credit: Aspergillus/Aspergillosis Website owned by the Fungal Research Trust

The J. Craig Venter Institute sequenced the Aspergillus clavatus strain NRRL 1 genome at 11.4X coverage using whole genome shotgun (WGS) sequencing. Version 3 of the genome assembly consists of 231 contigs in 143 scaffolds. The genome assembly has undergone automated annotation.

References

  1. CADRE: the Central Aspergillus Data REpository.
    Mabey JE, Anderson MJ, Giles PF, Miller CJ, Attwood TK, Paton NW, Bornberg-Bauer E, Robson GD, Oliver SG, Denning DW. 2004. Nucleic Acids Res.. 32:D401-5.
  2. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.
    Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A et al. 2008. PLoS Genet.. 4:e1000046.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyASM271v1, INSDC Assembly GCA_000002715.1, Nov 2008
Database version112.1
Golden Path Length27,859,441
Genebuild by
Genebuild methodImport
Data sourceEuropean Nucleotide Archive

Gene counts

Coding genes9,121
Non coding genes235
Small non coding genes235
Gene transcripts9,356