Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Statistics about the gene tree nodes
| Species | # Nodes | # speciation nodes | # duplication nodes | # dubious nodes | Node types | Average duplication confidence score | Average duplication confidence score (non-dubious nodes) |
|---|---|---|---|---|---|---|---|
| Fungi (Fungi) | 22121 | 11780 | 5093 | 5248 | 6.8 % | 13.9 % | |
| Fungi incertae sedis | 23363 | 20135 | 1335 | 1893 | 11.0 % | 26.7 % | |
| Mucoromycota | 4814 | 4588 | 170 | 56 | 29.5 % | 39.3 % | |
| Mortierellaceae | 10540 | 8624 | 1916 | 0 | 77.7 % | 77.7 % | |
| Mucoromycotina | 3324 | 3093 | 218 | 13 | 48.7 % | 51.6 % | |
| Pin molds (Mucorales) | 28670 | 24820 | 3710 | 140 | 49.9 % | 51.8 % | |
| Lichtheimia | 10620 | 9086 | 1534 | 0 | 85.3 % | 85.3 % | |
| Cunninghamellaceae | 7397 | 7148 | 249 | 0 | 71.9 % | 71.9 % | |
| Mucorineae | 17087 | 16099 | 962 | 26 | 55.1 % | 56.6 % | |
| Rhizopus | 7698 | 7161 | 537 | 0 | 68.6 % | 68.6 % | |
| Microsporidians (Microsporidia) | 7397 | 5232 | 264 | 1901 | 4.2 % | 34.6 % | |
| Microsporidia incertae sedis | 1278 | 1270 | 8 | 0 | 50.0 % | 50.0 % | |
| Apansporoblastina | 1744 | 1574 | 26 | 144 | 5.6 % | 36.8 % | |
| Nosematidae | 302 | 299 | 3 | 0 | 66.7 % | 66.7 % | |
| Enterocytozoonidae | 1942 | 1871 | 14 | 57 | 13.5 % | 68.5 % | |
| Enterocytozoon | 961 | 956 | 5 | 0 | 60.0 % | 60.0 % | |
| Pleistophoridae | 1999 | 1896 | 103 | 0 | 76.7 % | 76.7 % | |
| Chytridiomycota incertae sedis | 7467 | 7116 | 243 | 108 | 32.4 % | 46.8 % | |
| Neocallimastigaceae | 18928 | 15715 | 3213 | 0 | 73.9 % | 73.9 % | |
| Chytridiomycetes | 3719 | 3586 | 133 | 0 | 62.8 % | 62.8 % | |
| Cryptomycota incertae sedis | 910 | 894 | 16 | 0 | 59.4 % | 59.4 % | |
| Dikarya | 24266 | 13056 | 5480 | 5730 | 5.6 % | 11.4 % | |
| Ascomycete fungi (Ascomycota) | 8100 | 5979 | 550 | 1571 | 2.8 % | 10.9 % | |
| Taphrinomycotina | 7555 | 7529 | 26 | 0 | 40.8 % | 40.8 % | |
| Pneumocystis | 6588 | 6574 | 14 | 0 | 88.1 % | 88.1 % | |
| Schizosaccharomyces | 13554 | 13129 | 425 | 0 | 80.0 % | 80.0 % | |
| saccharomyceta | 7638 | 5681 | 1072 | 885 | 6.5 % | 11.9 % | |
| Filamentous ascomycetes (Pezizomycotina) | 17990 | 13811 | 2263 | 1916 | 6.3 % | 11.7 % | |
| Orbiliaceae | 13958 | 13174 | 784 | 0 | 70.8 % | 70.8 % | |
| leotiomyceta | 125803 | 72305 | 19405 | 34093 | 4.3 % | 12.0 % | |
| Eurotiomycetes | 8364 | 7616 | 193 | 555 | 4.9 % | 19.0 % | |
| Chaetothyriomycetidae | 10017 | 9828 | 104 | 85 | 16.4 % | 29.9 % | |
| Black yeasts (Chaetothyriales) | 8157 | 7840 | 250 | 67 | 25.4 % | 32.3 % | |
| Herpotrichiellaceae | 44335 | 43479 | 856 | 0 | 44.2 % | 44.2 % | |
| Eurotiomycetidae | 10806 | 9353 | 434 | 1019 | 5.8 % | 19.3 % | |
| Onygenales | 30306 | 24529 | 442 | 5335 | 2.5 % | 32.2 % | |
| Ajellomycetaceae | 22360 | 22150 | 210 | 0 | 50.1 % | 50.1 % | |
| Onygenaceae | 6024 | 5981 | 42 | 1 | 56.2 % | 57.5 % | |
| Coccidioides | 7537 | 7467 | 70 | 0 | 72.1 % | 72.1 % | |
| Dermatophytes (Arthrodermataceae) | 14435 | 14203 | 232 | 0 | 62.6 % | 62.6 % | |
| Green and blue molds (Eurotiales) | 25423 | 22951 | 776 | 1696 | 8.5 % | 27.2 % | |
| Aspergillaceae | 16230 | 15001 | 431 | 798 | 10.6 % | 30.2 % | |
| Aspergillus | 17649 | 16484 | 350 | 815 | 9.9 % | 33.1 % | |
| Aspergillus subgen. Fumigati | 16261 | 16173 | 88 | 0 | 52.7 % | 52.7 % | |
| Aspergillus fumigatus | 9336 | 9291 | 45 | 0 | 58.9 % | 58.9 % | |
| Aspergillus subgen. Circumdati | 24157 | 23808 | 349 | 0 | 63.0 % | 63.0 % | |
| Trichocomaceae | 5362 | 5321 | 37 | 4 | 38.4 % | 42.6 % | |
| Talaromyces | 14055 | 13868 | 187 | 0 | 51.2 % | 51.2 % | |
| sordariomyceta | 18199 | 14065 | 1341 | 2793 | 5.1 % | 15.8 % | |
| Leotiomycetes | 19596 | 15140 | 1074 | 3382 | 6.6 % | 27.2 % | |
| Erysiphaceae | 4726 | 4707 | 19 | 0 | 72.8 % | 72.8 % | |
| Erysiphe | 5327 | 4965 | 362 | 0 | 80.0 % | 80.0 % | |
| Helotiales | 73443 | 70749 | 2413 | 281 | 38.3 % | 42.7 % | |
| Mollisiaceae | 11917 | 11496 | 421 | 0 | 64.3 % | 64.3 % | |
| Drepanopezizaceae | 6403 | 6398 | 5 | 0 | 50.0 % | 50.0 % | |
| Sclerotiniaceae | 6046 | 5977 | 69 | 0 | 64.5 % | 64.5 % | |
| Sordariomycetes | 49967 | 37990 | 2860 | 9117 | 3.6 % | 15.2 % | |
| Hypocreomycetidae | 22848 | 20522 | 744 | 1582 | 6.2 % | 19.3 % | |
| Microascales | 3260 | 3257 | 2 | 1 | 19.4 % | 29.2 % | |
| Microascaceae | 5788 | 5671 | 117 | 0 | 63.7 % | 63.7 % | |
| Ceratocystidaceae | 3840 | 3836 | 4 | 0 | 62.5 % | 62.5 % | |
| Hypocreales | 66496 | 58133 | 1947 | 6416 | 5.8 % | 25.1 % | |
| Clavicipitaceae | 29938 | 29547 | 336 | 55 | 37.3 % | 43.4 % | |
| Metarhizium | 6828 | 6798 | 30 | 0 | 56.7 % | 56.7 % | |
| Hypocreaceae | 4462 | 4454 | 7 | 1 | 47.5 % | 54.3 % | |
| Trichoderma | 27506 | 27032 | 474 | 0 | 57.4 % | 57.4 % | |
| Ophiocordycipitaceae | 24835 | 23905 | 277 | 653 | 13.2 % | 44.2 % | |
| Ophiocordyceps | 3559 | 3539 | 20 | 0 | 70.0 % | 70.0 % | |
| Tolypocladium | 12906 | 12831 | 75 | 0 | 50.2 % | 50.2 % | |
| Stachybotrys | 9264 | 8977 | 287 | 0 | 69.0 % | 69.0 % | |
| Nectriaceae | 9262 | 8819 | 347 | 96 | 29.9 % | 38.2 % | |
| Fusarium | 34925 | 33493 | 1152 | 280 | 34.5 % | 42.9 % | |
| Fusarium sambucinum species complex | 22728 | 22561 | 167 | 0 | 61.8 % | 61.8 % | |
| Fusarium fujikuroi species complex | 10936 | 10894 | 42 | 0 | 61.9 % | 61.9 % | |
| Glomerellales | 7313 | 7209 | 81 | 23 | 27.7 % | 35.6 % | |
| Verticillium | 11570 | 9030 | 2498 | 42 | 36.5 % | 37.1 % | |
| Verticillium dahliae | 9187 | 9149 | 38 | 0 | 68.4 % | 68.4 % | |
| Colletotrichum | 30299 | 29586 | 713 | 0 | 54.4 % | 54.4 % | |
| Xylariales | 31555 | 31084 | 425 | 46 | 40.7 % | 45.1 % | |
| Hypoxylaceae | 8372 | 8326 | 46 | 0 | 59.8 % | 59.8 % | |
| Sordariomycetidae | 36452 | 35801 | 257 | 394 | 13.1 % | 33.3 % | |
| Magnaporthales | 7809 | 7637 | 167 | 5 | 50.7 % | 52.2 % | |
| Rice blast fungus (Pyricularia oryzae) | 11104 | 10764 | 340 | 0 | 79.7 % | 79.7 % | |
| Magnaporthaceae | 7849 | 7584 | 265 | 0 | 62.1 % | 62.1 % | |
| Ophiostomataceae | 15538 | 13497 | 198 | 1843 | 4.5 % | 46.3 % | |
| Sporothrix | 13058 | 12917 | 141 | 0 | 63.6 % | 63.6 % | |
| Diaporthales | 14135 | 14009 | 126 | 0 | 53.6 % | 53.6 % | |
| Sordariales | 12365 | 12269 | 95 | 1 | 52.3 % | 52.9 % | |
| Sordariaceae | 8145 | 7976 | 169 | 0 | 71.9 % | 71.9 % | |
| Dothideomycetes | 20311 | 18457 | 431 | 1423 | 5.2 % | 22.5 % | |
| Dothideomycetes incertae sedis | 4952 | 4939 | 12 | 1 | 41.0 % | 44.4 % | |
| Botryosphaeriaceae | 7965 | 7494 | 471 | 0 | 66.2 % | 66.2 % | |
| Dothideomycetidae | 22363 | 20667 | 364 | 1332 | 6.6 % | 30.9 % | |
| Mycosphaerellales | 8651 | 8299 | 142 | 210 | 10.3 % | 25.5 % | |
| Mycosphaerellaceae | 42058 | 41384 | 653 | 21 | 42.7 % | 44.1 % | |
| Pseudocercospora | 7113 | 7030 | 83 | 0 | 68.1 % | 68.1 % | |
| Zymoseptoria | 8578 | 8282 | 296 | 0 | 75.3 % | 75.3 % | |
| Teratosphaeriaceae | 12461 | 12429 | 32 | 0 | 51.0 % | 51.0 % | |
| Rachicladosporium | 21497 | 13457 | 8040 | 0 | 77.4 % | 77.4 % | |
| Pleosporales | 54034 | 37548 | 1659 | 14827 | 2.7 % | 27.3 % | |
| Pleosporineae | 30318 | 29874 | 216 | 228 | 15.7 % | 32.3 % | |
| Pleosporaceae | 36590 | 36184 | 381 | 25 | 42.6 % | 45.4 % | |
| Bipolaris | 10318 | 10220 | 98 | 0 | 63.3 % | 63.3 % | |
| Pyrenophora | 9389 | 9324 | 65 | 0 | 68.5 % | 68.5 % | |
| Didymellaceae | 7935 | 7909 | 26 | 0 | 63.5 % | 63.5 % | |
| Massarineae | 9113 | 9026 | 87 | 0 | 54.4 % | 54.4 % | |
| Truffles (Tuber) | 13064 | 12677 | 387 | 0 | 71.5 % | 71.5 % | |
| Budding yeasts (Saccharomycetales) | 57539 | 48096 | 1507 | 7936 | 3.5 % | 22.0 % | |
| Phaffomycetaceae | 5907 | 5757 | 97 | 53 | 36.9 % | 57.0 % | |
| Wickerhamomyces | 5093 | 4932 | 161 | 0 | 71.4 % | 71.4 % | |
| Cyberlindnera | 3716 | 3689 | 27 | 0 | 70.4 % | 70.4 % | |
| Komagataella phaffii GS115 | 4811 | 4724 | 87 | 0 | 88.5 % | 88.5 % | |
| Pichiaceae | 6655 | 6571 | 81 | 3 | 47.3 % | 49.1 % | |
| Ogataea | 4821 | 4742 | 79 | 0 | 77.8 % | 77.8 % | |
| Pichia | 4086 | 4024 | 62 | 0 | 69.4 % | 69.4 % | |
| Trichomonascaceae | 2169 | 2161 | 8 | 0 | 56.2 % | 56.2 % | |
| Saccharomycetales incertae sedis | 2002 | 1995 | 7 | 0 | 57.1 % | 57.1 % | |
| CTG clade (CUG-Ser1 clade) | 8817 | 8251 | 221 | 345 | 12.5 % | 32.0 % | |
| Metschnikowiaceae | 8754 | 8719 | 35 | 0 | 47.9 % | 47.9 % | |
| Metschnikowiaceae incertae sedis | 2112 | 2055 | 57 | 0 | 57.9 % | 57.9 % | |
| Debaryomycetaceae | 36006 | 35234 | 262 | 510 | 13.6 % | 40.0 % | |
| Candida/Lodderomyces clade | 6945 | 4716 | 63 | 2166 | 1.5 % | 54.5 % | |
| Candida | 7583 | 7483 | 100 | 0 | 71.7 % | 71.7 % | |
| Saccharomycetaceae | 48242 | 43812 | 1441 | 2989 | 10.9 % | 33.4 % | |
| Kazachstania | 3101 | 3077 | 24 | 0 | 58.3 % | 58.3 % | |
| Zygosaccharomyces | 4695 | 4648 | 47 | 0 | 79.8 % | 79.8 % | |
| Tetrapisispora | 1571 | 1568 | 3 | 0 | 50.0 % | 50.0 % | |
| Eremothecium | 3962 | 3941 | 21 | 0 | 79.4 % | 79.4 % | |
| Eremothecium gossypii | 4814 | 4758 | 56 | 0 | 97.3 % | 97.3 % | |
| Naumovozyma | 4698 | 4636 | 62 | 0 | 81.5 % | 81.5 % | |
| Lachancea | 4749 | 4703 | 46 | 0 | 59.8 % | 59.8 % | |
| Basidiomycete fungi (Basidiomycota) | 21691 | 17867 | 1272 | 2552 | 5.2 % | 15.5 % | |
| Pucciniomycotina | 7934 | 7832 | 91 | 11 | 35.7 % | 40.0 % | |
| Rust fungi (Pucciniales) | 5593 | 5124 | 464 | 5 | 60.8 % | 61.5 % | |
| Puccinia | 32980 | 29192 | 3752 | 36 | 60.4 % | 61.0 % | |
| Puccinia graminis f. sp. tritici | 15051 | 11489 | 3562 | 0 | 77.2 % | 77.2 % | |
| Microbotryomycetes | 11118 | 10687 | 423 | 8 | 56.5 % | 57.5 % | |
| Rhodotorula | 2022 | 1989 | 33 | 0 | 66.7 % | 66.7 % | |
| Ustilaginomycotina | 6790 | 5825 | 229 | 736 | 7.4 % | 31.0 % | |
| Smut fungi (Ustilaginales) | 7956 | 5374 | 65 | 2517 | 1.1 % | 44.7 % | |
| Ustilaginaceae | 27677 | 23442 | 123 | 4112 | 1.4 % | 47.0 % | |
| Ustilago | 2201 | 2195 | 6 | 0 | 58.3 % | 58.3 % | |
| Pseudozyma | 74 | 74 | 0 | 0 | 0.0 % | 0.0 % | |
| Exobasidiomycetidae (Exobasidiomycetes) | 20169 | 19825 | 137 | 207 | 18.2 % | 45.8 % | |
| Exobasidiales | 4627 | 4581 | 46 | 0 | 67.4 % | 67.4 % | |
| Microstromatales incertae sedis | 4594 | 4577 | 17 | 0 | 64.7 % | 64.7 % | |
| Hymenomycetes (Agaricomycotina) | 15606 | 11948 | 1445 | 2213 | 7.2 % | 18.3 % | |
| Tremellomycetidae (Tremellomycetes) | 5533 | 5236 | 230 | 67 | 35.3 % | 45.6 % | |
| Jelly fungi (Tremellales) | 12538 | 12033 | 371 | 134 | 37.1 % | 50.5 % | |
| Cryptococcaceae | 5380 | 5315 | 65 | 0 | 60.8 % | 60.8 % | |
| Agaricomycetes | 56937 | 28409 | 7926 | 20602 | 5.7 % | 20.3 % | |
| Agaricomycetidae | 32095 | 28609 | 1672 | 1814 | 14.6 % | 30.3 % | |
| Gill mushrooms (Agaricales) | 97885 | 91861 | 3798 | 2226 | 26.2 % | 41.6 % | |
| Amanita | 5659 | 5580 | 79 | 0 | 67.1 % | 67.1 % | |
| Lyophyllaceae | 5711 | 5621 | 90 | 0 | 60.0 % | 60.0 % | |
| Strophariaceae | 6657 | 6508 | 149 | 0 | 63.1 % | 63.1 % | |
| Physalacriaceae | 5212 | 5043 | 168 | 1 | 67.0 % | 67.4 % | |
| Armillaria | 36565 | 29582 | 6983 | 0 | 77.3 % | 77.3 % | |
| Agaricaceae | 230 | 206 | 24 | 0 | 66.7 % | 66.7 % | |
| Omphalotaceae | 3928 | 3542 | 386 | 0 | 68.8 % | 68.8 % | |
| Atheliaceae | 6847 | 6498 | 349 | 0 | 66.8 % | 66.8 % | |
| Boletales | 24485 | 21669 | 1609 | 1207 | 23.7 % | 41.6 % | |
| Suillineae | 7332 | 6834 | 498 | 0 | 72.8 % | 72.8 % | |
| Sclerodermatineae | 8208 | 7511 | 678 | 19 | 59.6 % | 61.2 % | |
| Pisolithus | 8413 | 7525 | 888 | 0 | 76.2 % | 76.2 % | |
| Paxillaceae | 2452 | 2262 | 190 | 0 | 65.8 % | 65.8 % | |
| Coniophorineae | 3238 | 3212 | 26 | 0 | 53.8 % | 53.8 % | |
| Agaricomycetes incertae sedis | 46462 | 44104 | 1147 | 1211 | 17.9 % | 36.8 % | |
| Cantharellales | 6482 | 6360 | 122 | 0 | 58.3 % | 58.3 % | |
| Russulales | 4503 | 4418 | 85 | 0 | 60.2 % | 60.2 % | |
| Gloeophyllaceae | 8311 | 7694 | 617 | 0 | 74.2 % | 74.2 % | |
| Hymenochaetales | 101 | 96 | 5 | 0 | 60.0 % | 60.0 % | |
| Sistotremastrum | 13583 | 10644 | 2939 | 0 | 88.5 % | 88.5 % | |
| Serendipita | 7138 | 6533 | 605 | 0 | 78.1 % | 78.1 % | |
| Polyporales | 58451 | 54880 | 2268 | 1303 | 29.2 % | 45.9 % | |
| Laetiporaceae | 5317 | 5261 | 56 | 0 | 61.6 % | 61.6 % | |
| Phanerochaetaceae | 7833 | 7344 | 489 | 0 | 74.0 % | 74.0 % | |
| Fomitopsidaceae | 8809 | 8096 | 713 | 0 | 76.6 % | 76.6 % | |
| Bracket fungi (Polyporaceae) | 12676 | 11562 | 1105 | 9 | 64.0 % | 64.5 % | |
| Trametes | 8123 | 7500 | 623 | 0 | 71.3 % | 71.3 % | |
| Dacrymycetaceae | 8640 | 7336 | 1274 | 30 | 72.1 % | 73.8 % | |
| Calocera | 8342 | 7779 | 563 | 0 | 74.4 % | 74.4 % |
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