Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Gene tree coverage and Gene QC (per species)
Quick links: Agaricales, Atheliales, Blastocladiales, Boletales, Botryosphaeriales, Cantharellales, Capnodiales, Chaetothyriomycetidae, Chytridiomycota, Corticiales, Cryptomycota, Culicosporidae, Dacrymycetales, Dothideomycetes, Dothideales, Erysiphales, Eurotiales, Geastrales, Georgefischeriales, Gloeophyllales, Glomerellales, Helotiales, Hymenochaetales, Hypocreales, Jaapiales, Magnaporthales, Microascales, Microbotryales, Microsporidia, Mixiales, Mortierellomycotina, Mucoromycotina, Myxotrichaceae, Nosematidae, Onygenales, Ophiostomatales, Orbiliales, Ordosporidae, Pezizales, Pleistophoridae, Pleosporales, Pneumocystidales, Polyporales, Pucciniales, Rhizophydiales, Russulales, Saccharomycetales, Schizosaccharomycetales, Sclerotiniaceae, Sebacinales, Sordariales, Sordariomycetidae, Sporidiobolales, Spraguidae, Taphrinomycotina, Tremellales, Tubulinosematidae, Ustilaginales, Verrucariales, Wallemiales, Xylariales, Fungi
Favourite species
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C) | 6600 | 5564 | 1036 | 121 | 5443 | 358 | 0 | 0 | 0 | ||
| Schizosaccharomyces pombe (Schizosaccharomyces pombe 972h-) | 5145 | 4910 | 235 | 68 | 4842 | 193 | 0 | 0 | 0 | ||
| Aspergillus nidulans (Aspergillus nidulans FGSC A4) | 10534 | 9557 | 977 | 68 | 9489 | 262 | 0 | 0 | 0 | ||
| Puccinia graminis (Puccinia graminis f. sp. tritici CRL 75-36-700-3) | 15800 | 14534 | 1266 | 157 | 14377 | 1468 | 0 | 0 | 0 | ||
| Magnaporthe oryzae (Pyricularia oryzae 70-15 strain 75-15) | 12593 | 11469 | 1124 | 53 | 11416 | 225 | 0 | 0 | 0 | ||
| Zymoseptoria tritici (Zymoseptoria tritici IPO323) | 10931 | 9690 | 1241 | 65 | 9625 | 167 | 0 | 0 | 0 |
Agaricales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Amanita thiersii Skay4041 (Amanita thiersii Skay4041) | 10346 | 9339 | 1007 | 1102 | 8237 | 1720 | 0 | 0 | 0 | ||
| Armillaria solidipes str. 28-4 (Armillaria solidipes) | 20808 | 18665 | 2143 | 414 | 18251 | 1234 | 0 | 0 | 0 | ||
| Agaricus bisporus var. burnettii JB137-S8 (Agaricus bisporus var. burnettii JB137-S8) | 11271 | 10064 | 1207 | 1701 | 8363 | 2597 | 0 | 0 | 0 | ||
| Hypsizygus marmoreus str. 51987-8 (Hypsizygus marmoreus) | 16627 | 13327 | 3300 | 1727 | 11600 | 2933 | 0 | 0 | 0 | ||
| Armillaria gallica str. Ar21-2 (Armillaria gallica) | 25695 | 22461 | 3234 | 1833 | 20628 | 4431 | 0 | 0 | 0 | ||
| Leucoagaricus sp. SymC.cos (Leucoagaricus sp. SymC.cos) | 698 | 484 | 214 | 20 | 464 | 73 | 0 | 0 | 0 | ||
| Cylindrobasidium torrendii FP15055 ss-10 (Cylindrobasidium torrendii FP15055 ss-10) | 13927 | 11854 | 2073 | 1916 | 9938 | 2906 | 0 | 0 | 0 | ||
| Gymnopus luxurians FD-317 M1 (Gymnopus luxurians FD-317 M1) | 14594 | 12208 | 2386 | 3047 | 9161 | 5178 | 0 | 0 | 0 | ||
| Laccaria amethystina LaAM-08-1 (Laccaria amethystina LaAM-08-1) | 21020 | 15834 | 5186 | 3407 | 12427 | 5210 | 0 | 0 | 0 | ||
| Moniliophthora roreri MCA 2997 (Moniliophthora roreri MCA 2997) | 17910 | 15726 | 2184 | 2862 | 12864 | 5425 | 0 | 0 | 0 | ||
| Lentinula edodes str. G408PP-4 (Lentinula edodes) | 12051 | 10300 | 1751 | 848 | 9452 | 1981 | 0 | 0 | 0 | ||
| Hypholoma sublateritium FD-334 SS-4 (Hypholoma sublateritium FD-334 SS-4) | 17766 | 14094 | 3672 | 1724 | 12370 | 3434 | 0 | 0 | 0 | ||
| Amanita muscaria Koide BX008 (Amanita muscaria Koide BX008) | 18086 | 13615 | 4471 | 2828 | 10787 | 4750 | 0 | 0 | 0 | ||
| Galerina marginata CBS 339.88 (Galerina marginata CBS 339.88) | 21388 | 17518 | 3870 | 2225 | 15293 | 5316 | 0 | 0 | 0 | ||
| Termitomyces sp. J132 (Termitomyces sp. J132) | 11143 | 10514 | 629 | 1309 | 9205 | 2680 | 0 | 0 | 0 | ||
| Coprinopsis cinerea okayama7#130 (Coprinopsis cinerea okayama7#130) | 13355 | 11106 | 2249 | 1456 | 9650 | 2369 | 0 | 0 | 0 | ||
| Schizophyllum commune H4-8 (Schizophyllum commune H4-8) | 13190 | 11265 | 1925 | 1696 | 9569 | 2924 | 0 | 0 | 0 | ||
| Fistulina hepatica ATCC 64428 (Fistulina hepatica ATCC 64428) | 9387 | 8246 | 1141 | 1066 | 7180 | 1872 | 0 | 0 | 0 | ||
| Pleurotus ostreatus PC15 (Pleurotus ostreatus PC15) | 12296 | 10944 | 1352 | 972 | 9972 | 2240 | 0 | 0 | 0 | ||
| Hebeloma cylindrosporum h7 (Hebeloma cylindrosporum h7) | 15373 | 12248 | 3125 | 745 | 11503 | 2168 | 0 | 0 | 0 | ||
| Armillaria ostoyae (Armillaria ostoyae) | 22299 | 19584 | 2715 | 573 | 19011 | 2491 | 0 | 0 | 0 |
Atheliales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Fibularhizoctonia sp. CBS 109695 (Fibularhizoctonia sp. CBS 109695) | 32847 | 28157 | 4690 | 8898 | 19259 | 15024 | 0 | 0 | 0 | ||
| Piloderma croceum F 1598 (Piloderma croceum F 1598) | 21515 | 15901 | 5614 | 2061 | 13840 | 4523 | 0 | 0 | 0 |
Blastocladiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Allomyces macrogynus ATCC 38327 (Allomyces macrogynus ATCC 38327) | 18774 | 16636 | 2138 | 5609 | 11027 | 9474 | 0 | 0 | 0 |
Boletales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Serpula lacrymans var. lacrymans S7.3 (Serpula lacrymans var. lacrymans S7.3) | 14481 | 11890 | 2591 | 2002 | 9888 | 3333 | 0 | 0 | 0 | ||
| Hydnomerulius pinastri MD-312 (Hydnomerulius pinastri MD-312) | 7912 | 7079 | 833 | 537 | 6542 | 1479 | 0 | 0 | 0 | ||
| Rhizopogon vesiculosus str. AM-OR11-056 (Rhizopogon vesiculosus) | 14191 | 12115 | 2076 | 1535 | 10580 | 3307 | 0 | 0 | 0 | ||
| Pisolithus tinctorius Marx 270 (Pisolithus tinctorius Marx 270) | 22644 | 18099 | 4545 | 3324 | 14775 | 7621 | 0 | 0 | 0 | ||
| Paxillus involutus ATCC 200175 (Paxillus involutus ATCC 200175) | 11700 | 10623 | 1077 | 1672 | 8951 | 4916 | 0 | 0 | 0 | ||
| Pisolithus microcarpus 441 (Pisolithus microcarpus 441) | 20968 | 16626 | 4342 | 2217 | 14409 | 6297 | 0 | 0 | 0 | ||
| Suillus luteus UH-Slu-Lm8-n1 (Suillus luteus UH-Slu-Lm8-n1) | 18297 | 13998 | 4299 | 1313 | 12685 | 3736 | 0 | 0 | 0 | ||
| Scleroderma citrinum Foug A (Scleroderma citrinum Foug A) | 20990 | 16017 | 4973 | 2253 | 13764 | 6093 | 0 | 0 | 0 | ||
| Coniophora puteana RWD-64-598 SS2 (Coniophora puteana RWD-64-598 SS2) | 13758 | 12126 | 1632 | 1607 | 10519 | 3619 | 0 | 0 | 0 |
Botryosphaeriales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Neofusicoccum parvum UCRNP2 (Neofusicoccum parvum UCRNP2) | 10366 | 9692 | 674 | 17 | 9675 | 150 | 0 | 0 | 0 | ||
| Macrophomina phaseolina MS6 (Macrophomina phaseolina MS6) | 13806 | 11280 | 2526 | 177 | 11103 | 519 | 0 | 0 | 0 |
Cantharellales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Botryobasidium botryosum FD-172 SS1 (Botryobasidium botryosum FD-172 SS1) | 16501 | 13289 | 3212 | 2824 | 10465 | 4931 | 0 | 0 | 0 | ||
| Rhizoctonia solani AG-1 IA str. AG1 IA (Rhizoctonia solani AG-1 IA) | 10489 | 6453 | 4036 | 649 | 5804 | 1000 | 0 | 0 | 0 | ||
| Tulasnella calospora MUT 4182 (Tulasnella calospora MUT 4182) | 19545 | 15390 | 4155 | 4764 | 10626 | 7178 | 0 | 0 | 0 |
Capnodiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ramularia collo-cygni (Ramularia collo-cygni) | 11502 | 9901 | 1601 | 210 | 9691 | 222 | 0 | 0 | 0 | ||
| Cercospora berteroae (Cercospora berteroae) | 11903 | 10784 | 1119 | 216 | 10568 | 285 | 0 | 0 | 0 |
Chaetothyriomycetidae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Rhinocladiella mackenziei CBS 650.93 (Rhinocladiella mackenziei CBS 650.93) | 11382 | 10600 | 782 | 86 | 10514 | 311 | 0 | 0 | 0 | ||
| Exophiala aquamarina CBS 119918 (Exophiala aquamarina CBS 119918) | 13118 | 12393 | 725 | 23 | 12370 | 333 | 0 | 0 | 0 | ||
| Phaeomoniella chlamydospora (Phaeomoniella chlamydospora) | 6907 | 6484 | 423 | 8 | 6476 | 54 | 0 | 0 | 0 | ||
| Capronia epimyces CBS 606.96 (Capronia epimyces CBS 606.96) | 10469 | 9990 | 479 | 11 | 9979 | 85 | 0 | 0 | 0 | ||
| Phialophora americana str. CBS 27337 (Phialophora americana) | 10919 | 10359 | 560 | 8 | 10351 | 24 | 0 | 0 | 0 | ||
| Fonsecaea erecta (Fonsecaea erecta) | 12090 | 11265 | 825 | 98 | 11167 | 206 | 0 | 0 | 0 | ||
| Cyphellophora europaea CBS 101466 (Cyphellophora europaea CBS 101466) | 11094 | 10157 | 937 | 84 | 10073 | 249 | 0 | 0 | 0 | ||
| Cladophialophora carrionii str. KSF (Cladophialophora carrionii) | 11181 | 10091 | 1090 | 4 | 10087 | 31 | 0 | 0 | 0 |
Chytridiomycota
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Rhizoclosmatium globosum str. JEL800 (Rhizoclosmatium globosum) | 16987 | 12422 | 4565 | 4277 | 8145 | 5381 | 0 | 0 | 0 | ||
| Gonapodya prolifera JEL478 (Gonapodya prolifera JEL478) | 13827 | 9288 | 4539 | 2096 | 7192 | 2838 | 0 | 0 | 0 | ||
| Anaeromyces robustus str. S4 (Anaeromyces robustus) | 12823 | 11460 | 1363 | 873 | 10587 | 2454 | 0 | 0 | 0 | ||
| Piromyces finnis (Piromyces finnis) | 10959 | 10091 | 868 | 435 | 9656 | 1491 | 0 | 0 | 0 | ||
| Neocallimastix californiae str. G1 (Neocallimastix californiae) | 20200 | 18513 | 1687 | 2056 | 16457 | 8151 | 0 | 0 | 0 | ||
| Spizellomyces punctatus DAOM BR117 (Spizellomyces punctatus DAOM BR117) | 8950 | 7180 | 1770 | 359 | 6821 | 567 | 0 | 0 | 0 |
Corticiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Punctularia strigosozonata HHB-11173 SS5 (Punctularia strigosozonata HHB-11173 SS5) | 2097 | 1739 | 358 | 203 | 1536 | 401 | 0 | 0 | 0 |
Cryptomycota
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Rozella allomycis CSF55 (Rozella allomycis CSF55) | 6350 | 4081 | 2269 | 644 | 3437 | 586 | 0 | 0 | 0 | ||
| Paramicrosporidium saccamoebae str. KSL3 (Paramicrosporidium saccamoebae) | 3766 | 2615 | 1151 | 362 | 2253 | 325 | 0 | 0 | 0 |
Culicosporidae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Edhazardia aedis USNM 41457 (Edhazardia aedis USNM 41457) | 4190 | 1972 | 2218 | 603 | 1369 | 495 | 0 | 0 | 0 |
Dacrymycetales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Calocera viscosa TUFC12733 (Calocera viscosa TUFC12733) | 12357 | 10681 | 1676 | 381 | 10300 | 1314 | 0 | 0 | 0 | ||
| Calocera cornea HHB12733 (Calocera cornea HHB12733) | 13152 | 10995 | 2157 | 602 | 10393 | 1506 | 0 | 0 | 0 | ||
| Dacryopinax primogenitus str. DJM-731 SS1 (Dacryopinax primogenitus) | 10240 | 8992 | 1248 | 452 | 8540 | 901 | 0 | 0 | 0 |
Dothideomycetes
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Coniosporium apollinis CBS 100218 str. CBS 352.97 (Coniosporium apollinis CBS 100218) | 9308 | 8383 | 925 | 84 | 8299 | 145 | 0 | 0 | 0 | ||
| Sphaerulina musiva SO2202 (Sphaerulina musiva SO2202) | 10156 | 8830 | 1326 | 108 | 8722 | 124 | 0 | 0 | 0 | ||
| Pseudocercospora fijiensis CIRAD86 (Pseudocercospora fijiensis CIRAD86) | 13047 | 10309 | 2738 | 57 | 10252 | 109 | 0 | 0 | 0 | ||
| Zymoseptoria tritici (Zymoseptoria tritici IPO323) | 10931 | 9690 | 1241 | 65 | 9625 | 167 | 0 | 0 | 0 | ||
| Zymoseptoria brevis str. Zb18110 (Zymoseptoria brevis) | 10566 | 9859 | 707 | 52 | 9807 | 144 | 0 | 0 | 0 | ||
| Hortaea werneckii EXF-2000 (Hortaea werneckii EXF-2000) | 15620 | 15196 | 424 | 245 | 14951 | 6695 | 0 | 0 | 0 | ||
| Dothistroma septosporum (Dothistroma septosporum NZE10) | 12400 | 9639 | 2761 | 65 | 9574 | 124 | 0 | 0 | 0 | ||
| Elsinoe australis str. NL1 (Elsinoe australis ASM301379v1) | 9223 | 8204 | 1019 | 124 | 8080 | 260 | 0 | 0 | 0 | ||
| Rachicladosporium antarcticum (Rachicladosporium antarcticum) | 18781 | 18329 | 452 | 101 | 18228 | 1493 | 0 | 0 | 0 | ||
| Baudoinia panamericana UAMH 10762 (Baudoinia panamericana UAMH 10762) | 10508 | 8263 | 2245 | 26 | 8237 | 62 | 0 | 0 | 0 | ||
| Acidomyces richmondensis BFW (Acidomyces richmondensis BFW) | 11177 | 9563 | 1614 | 788 | 8775 | 850 | 0 | 0 | 0 | ||
| Pseudocercospora musae str. CBS 116634 (Pseudocercospora musae) | 10402 | 8447 | 1955 | 30 | 8417 | 86 | 0 | 0 | 0 | ||
| Rachicladosporium sp. CCFEE 5018 (Rachicladosporium sp. CCFEE 5018) | 18892 | 18200 | 692 | 206 | 17994 | 2727 | 0 | 0 | 0 |
Dothideales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Aureobasidium melanogenum CBS 110374 (Aureobasidium melanogenum CBS 110374) | 10584 | 9244 | 1340 | 366 | 8878 | 506 | 0 | 0 | 0 |
Erysiphales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Blumeria graminis (Blumeria hordei DH14 strain f. sp. hordei DH14) | 7118 | 6600 | 518 | 816 | 5784 | 1092 | 0 | 0 | 0 | ||
| Erysiphe pulchra (Erysiphe pulchra) | 6859 | 6662 | 197 | 89 | 6573 | 858 | 0 | 0 | 0 | ||
| Erysiphe necator (Erysiphe necator) | 6484 | 6254 | 230 | 149 | 6105 | 710 | 0 | 0 | 0 |
Eurotiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Aspergillus fumigatus Af293 (Aspergillus fumigatus Af293) | 9623 | 9557 | 66 | 9 | 9548 | 24 | 0 | 0 | 0 | ||
| Penicillium antarcticum (Penicillium antarcticum) | 11514 | 10261 | 1253 | 278 | 9983 | 662 | 0 | 0 | 0 | ||
| Aspergillus terreus NIH2624 (Aspergillus terreus NIH2624) | 10401 | 9810 | 591 | 9 | 9801 | 116 | 0 | 0 | 0 | ||
| Aspergillus fumigatus A1163 (Aspergillus fumigatus A1163) | 9929 | 9737 | 192 | 6 | 9731 | 41 | 0 | 0 | 0 | ||
| Rasamsonia emersonii CBS 393.64 (Rasamsonia emersonii CBS 393.64) | 9843 | 8383 | 1460 | 99 | 8284 | 225 | 0 | 0 | 0 | ||
| Elaphomyces granulatus str. OSC145934 (Elaphomyces granulatus) | 7171 | 6707 | 464 | 68 | 6639 | 403 | 0 | 0 | 0 | ||
| Aspergillus fischeri NRRL 181 (Aspergillus fischeri NRRL 181) | 10395 | 10064 | 331 | 24 | 10040 | 80 | 0 | 0 | 0 | ||
| Talaromyces atroroseus str. IBT 11181 (Talaromyces atroroseus) | 9523 | 9131 | 392 | 18 | 9113 | 61 | 0 | 0 | 0 | ||
| Aspergillus clavatus NRRL 1 (Aspergillus clavatus NRRL 1) | 9121 | 8724 | 397 | 6 | 8718 | 26 | 0 | 0 | 0 | ||
| Byssochlamys spectabilis No. 5 str. Paecilomyces variotii No. 5 (NBRC109023) (Paecilomyces variotii No. 5) | 8877 | 8459 | 418 | 12 | 8447 | 74 | 0 | 0 | 0 | ||
| Talaromyces islandicus (Talaromyces islandicus) | 9927 | 9508 | 419 | 54 | 9454 | 150 | 0 | 0 | 0 | ||
| Aspergillus flavus NRRL3357 (Aspergillus flavus NRRL3357) | 13485 | 12220 | 1265 | 4 | 12216 | 29 | 0 | 0 | 0 | ||
| Aspergillus niger (Aspergillus niger ASM285v2) | 13872 | 10557 | 3315 | 44 | 10513 | 208 | 0 | 0 | 0 | ||
| Penicilliopsis zonata CBS 506.65 (Penicilliopsis zonata CBS 506.65) | 9869 | 8880 | 989 | 48 | 8832 | 196 | 0 | 0 | 0 | ||
| Aspergillus nidulans (Aspergillus nidulans FGSC A4) | 10534 | 9557 | 977 | 68 | 9489 | 262 | 0 | 0 | 0 | ||
| Talaromyces stipitatus ATCC 10500 (Talaromyces stipitatus ATCC 10500) | 12457 | 11703 | 754 | 359 | 11344 | 1347 | 0 | 0 | 0 | ||
| Aspergillus oryzae RIB40 (Aspergillus oryzae RIB40 strain RIB 40) | 12074 | 11514 | 560 | 21 | 11493 | 71 | 0 | 0 | 0 |
Geastrales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sphaerobolus stellatus SS14 (Sphaerobolus stellatus SS14) | 25075 | 21813 | 3262 | 9293 | 12520 | 12741 | 0 | 0 | 0 |
Georgefischeriales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Tilletiaria anomala UBC 951 (Tilletiaria anomala UBC 951) | 6808 | 5330 | 1478 | 67 | 5263 | 108 | 0 | 0 | 0 |
Gloeophyllales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Neolentinus lepideus HHB14362 ss-1 (Neolentinus lepideus HHB14362 ss-1) | 13155 | 11350 | 1805 | 903 | 10447 | 1710 | 0 | 0 | 0 | ||
| Gloeophyllum trabeum ATCC 11539 (Gloeophyllum trabeum ATCC 11539) | 11755 | 10740 | 1015 | 427 | 10313 | 1228 | 0 | 0 | 0 |
Glomerellales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Colletotrichum graminicola (Colletotrichum graminicola M1.001) | 12020 | 10953 | 1067 | 25 | 10928 | 68 | 0 | 0 | 0 | ||
| Colletotrichum gloeosporioides (Colletotrichum fructicola Nara gc5) | 15381 | 14347 | 1034 | 90 | 14257 | 348 | 0 | 0 | 0 | ||
| Colletotrichum orbiculare (Colletotrichum orbiculare MAFF 240422) | 13346 | 11829 | 1517 | 27 | 11802 | 90 | 0 | 0 | 0 | ||
| Verticillium dahliae (Verticillium dahliae VdLs.17) | 10535 | 10190 | 345 | 5 | 10185 | 40 | 0 | 0 | 0 | ||
| Colletotrichum higginsianum (Colletotrichum higginsianum strain IMI 349063) | 16141 | 13391 | 2750 | 133 | 13258 | 1048 | 0 | 0 | 0 | ||
| Verticillium longisporum (Verticillium longisporum vl2.denovo.v1) | 21072 | 18330 | 2742 | 303 | 18027 | 4529 | 0 | 0 | 0 | ||
| Verticillium dahliae JR2 (Verticillium dahliae JR2) | 11391 | 10123 | 1268 | 19 | 10104 | 58 | 0 | 0 | 0 |
Helotiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Diplocarpon rosae (Diplocarpon rosae) | 13761 | 13416 | 345 | 169 | 13247 | 5854 | 0 | 0 | 0 | ||
| Rutstroemia sp. NJR-2017a BBW (Rutstroemia sp. NJR-2017a BBW) | 10975 | 10197 | 778 | 103 | 10094 | 398 | 0 | 0 | 0 | ||
| Phialocephala subalpina (Phialocephala subalpina) | 20173 | 17974 | 2199 | 131 | 17843 | 658 | 0 | 0 | 0 | ||
| Rhynchosporium agropyri (Rhynchosporium agropyri) | 13673 | 10852 | 2821 | 137 | 10715 | 243 | 0 | 0 | 0 | ||
| Pezoloma ericae str. UAMH 7357 (Hyaloscypha hepaticicola) | 16783 | 13384 | 3399 | 313 | 13071 | 572 | 0 | 0 | 0 | ||
| Glarea lozoyensis ATCC 20868 str. 1224 (Glarea lozoyensis ATCC 20868) | 13083 | 11158 | 1925 | 230 | 10928 | 331 | 0 | 0 | 0 | ||
| Cadophora sp. DSE1049 (Cadophora sp. DSE1049) | 22762 | 19284 | 3478 | 577 | 18707 | 1454 | 0 | 0 | 0 | ||
| Marssonina brunnea f. sp. 'multigermtubi' MB_m1 (Drepanopeziza brunnea f. sp. 'multigermtubi' MB_m1) | 10027 | 8809 | 1218 | 408 | 8401 | 511 | 0 | 0 | 0 | ||
| Phialocephala scopiformis str. CBS 120377 (Mollisia scopiformis) | 18567 | 15884 | 2683 | 134 | 15750 | 444 | 0 | 0 | 0 |
Hymenochaetales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Schizopora paradoxa str. KUC8140 (Schizopora paradoxa) | 17088 | 13634 | 3454 | 3303 | 10331 | 4782 | 0 | 0 | 0 | ||
| Fomitiporia mediterranea MF3/22 (Fomitiporia mediterranea MF3/22) | 533 | 414 | 119 | 147 | 267 | 185 | 0 | 0 | 0 |
Hypocreales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Tolypocladium ophioglossoides CBS 100239 (Tolypocladium ophioglossoides CBS 100239) | 9158 | 8539 | 619 | 19 | 8520 | 106 | 0 | 0 | 0 | ||
| Trichoderma asperellum CBS 433.97 (Trichoderma asperellum CBS 433.97) | 12556 | 10776 | 1780 | 26 | 10750 | 107 | 0 | 0 | 0 | ||
| Stachybotrys chartarum IBT 40288 (Stachybotrys chartarum IBT 40288) | 11368 | 10656 | 712 | 42 | 10614 | 123 | 0 | 0 | 0 | ||
| Tolypocladium paradoxum str. NRBC 100945 (Tolypocladium paradoxum) | 8913 | 8274 | 639 | 7 | 8267 | 53 | 0 | 0 | 0 | ||
| Purpureocillium lilacinum (Purpureocillium lilacinum ASM165320v1) | 11773 | 9809 | 1964 | 79 | 9730 | 321 | 0 | 0 | 0 | ||
| Fusarium verticillioides (Fusarium verticillioides 7600) | 14166 | 12998 | 1168 | 14 | 12984 | 25 | 0 | 0 | 0 | ||
| Beauveria bassiana (Beauveria bassiana strain ARSEF 8028) | 10095 | 9351 | 744 | 53 | 9298 | 243 | 0 | 0 | 0 | ||
| Trichoderma atroviride IMI 206040 (Trichoderma atroviride IMI 206040) | 11771 | 10824 | 947 | 6 | 10818 | 36 | 0 | 0 | 0 | ||
| Drechmeria coniospora str. ARSEF 6962 (Drechmeria coniospora) | 8236 | 7317 | 919 | 182 | 7135 | 291 | 0 | 0 | 0 | ||
| Moelleriella libera RCEF 2490 (Moelleriella libera RCEF 2490) | 8461 | 7825 | 636 | 25 | 7800 | 74 | 0 | 0 | 0 | ||
| Stachybotrys chlorohalonata IBT 40285 (Stachybotrys chlorohalonata IBT 40285) | 10706 | 10094 | 612 | 28 | 10066 | 95 | 0 | 0 | 0 | ||
| Metarhizium acridum CQMa 102 (Metarhizium acridum CQMa 102) | 9849 | 9436 | 413 | 16 | 9420 | 115 | 0 | 0 | 0 | ||
| Fusarium pseudograminearum (Fusarium pseudograminearum CS3096) | 12448 | 11928 | 520 | 4 | 11924 | 15 | 0 | 0 | 0 | ||
| Escovopsis weberi (Escovopsis weberi) | 6870 | 6436 | 434 | 10 | 6426 | 9 | 0 | 0 | 0 | ||
| Fusarium oxysporum (Fusarium oxysporum f. sp. lycopersici 4287) | 17696 | 16490 | 1206 | 650 | 15840 | 1974 | 0 | 0 | 0 | ||
| Ophiocordyceps australis (Ophiocordyceps australis OphauG2) | 7992 | 7222 | 770 | 34 | 7188 | 115 | 0 | 0 | 0 | ||
| Tolypocladium capitatum str. CBS 113982 (Tolypocladium capitatum) | 7534 | 7117 | 417 | 4 | 7113 | 36 | 0 | 0 | 0 | ||
| Fusarium solani (Fusarium vanettenii 77-13-4 strain MPVI 77-13-4) | 15705 | 14875 | 830 | 112 | 14763 | 486 | 0 | 0 | 0 | ||
| Fusarium graminearum str. PH-1 (Fusarium graminearum strain PH-1) | 14145 | 13132 | 1013 | 2 | 13130 | 24 | 0 | 0 | 0 | ||
| Torrubiella hemipterigena str. BCC 1449 ([Torrubiella] hemipterigena) | 10773 | 10100 | 673 | 165 | 9935 | 664 | 0 | 0 | 0 | ||
| Trichoderma reesei (Trichoderma reesei QM6a) | 9113 | 8723 | 390 | 5 | 8718 | 14 | 0 | 0 | 0 | ||
| Fusarium fujikuroi (Fusarium fujikuroi strain IMI 58289) | 14815 | 14198 | 617 | 29 | 14169 | 101 | 0 | 0 | 0 | ||
| Ophiocordyceps camponoti-rufipedis (Ophiocordyceps camponoti-rufipedis) | 7618 | 6651 | 967 | 49 | 6602 | 106 | 0 | 0 | 0 | ||
| Claviceps purpurea 20.1 (Claviceps purpurea 20.1) | 8823 | 8225 | 598 | 462 | 7763 | 1265 | 0 | 0 | 0 | ||
| Hirsutella minnesotensis 3608 (Hirsutella minnesotensis 3608) | 9390 | 8719 | 671 | 315 | 8404 | 2206 | 0 | 0 | 0 | ||
| Pochonia chlamydosporia 170 (Pochonia chlamydosporia 170) | 14204 | 12025 | 2179 | 135 | 11890 | 639 | 0 | 0 | 0 | ||
| Neonectria ditissima str. R09/05 (Neonectria ditissima) | 12685 | 11891 | 794 | 49 | 11842 | 173 | 0 | 0 | 0 | ||
| Ustilaginoidea virens str. UV-8b (Ustilaginoidea virens Assembly_for_version_1_of_the_Villosiclava_virens_genome) | 8426 | 7030 | 1396 | 96 | 6934 | 131 | 0 | 0 | 0 | ||
| Acremonium chrysogenum ATCC 11550 (Acremonium chrysogenum ATCC 11550) | 8901 | 8121 | 780 | 4 | 8117 | 52 | 0 | 0 | 0 | ||
| Metarhizium rileyi RCEF 4871 (Metarhizium rileyi RCEF 4871) | 8764 | 8291 | 473 | 6 | 8285 | 56 | 0 | 0 | 0 | ||
| Fusarium culmorum UK99 (Fusarium culmorum CS7071 strain UK99) | 12465 | 11839 | 626 | 30 | 11809 | 90 | 0 | 0 | 0 | ||
| Trichoderma virens (Trichoderma virens Gv29-8) | 12400 | 11529 | 871 | 10 | 11519 | 164 | 0 | 0 | 0 |
Jaapiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Jaapia argillacea MUCL 33604 (Jaapia argillacea MUCL 33604) | 16373 | 13988 | 2385 | 2013 | 11975 | 3983 | 0 | 0 | 0 |
Magnaporthales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Gaeumannomyces tritici R3-111a-1 (Gaeumannomyces tritici R3-111a-1) | 14458 | 11169 | 3289 | 452 | 10717 | 631 | 0 | 0 | 0 | ||
| Magnaporthe oryzae (Pyricularia oryzae 70-15 strain 75-15) | 12593 | 11469 | 1124 | 53 | 11416 | 225 | 0 | 0 | 0 | ||
| Magnaporthe poae (Magnaporthiopsis poae ATCC 64411) | 11209 | 8929 | 2280 | 42 | 8887 | 142 | 0 | 0 | 0 | ||
| Magnaporthe oryzae (Pyricularia oryzae strain BR32) | 14349 | 12434 | 1915 | 185 | 12249 | 455 | 0 | 0 | 0 |
Microascales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lomentospora prolificans str. JHH-5317 (Lomentospora prolificans) | 8560 | 8342 | 218 | 12 | 8330 | 124 | 0 | 0 | 0 | ||
| Scedosporium apiospermum str. IHEM 14462 (Scedosporium apiospermum) | 8376 | 8031 | 345 | 29 | 8002 | 123 | 0 | 0 | 0 | ||
| Thielaviopsis punctulata (Thielaviopsis punctulata) | 5296 | 5267 | 29 | 0 | 5267 | 58 | 0 | 0 | 0 | ||
| Ceratocystis platani str. CFO (Ceratocystis platani) | 5622 | 5231 | 391 | 208 | 5023 | 344 | 0 | 0 | 0 |
Microbotryales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Microbotryum violaceum (Microbotryum lychnidis-dioicae p1A1 Lamole) | 7364 | 6658 | 706 | 523 | 6135 | 630 | 0 | 0 | 0 |
Microsporidia
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Enterospora canceri str. GB1 (Enterospora canceri) | 2169 | 1640 | 529 | 318 | 1322 | 319 | 0 | 0 | 0 | ||
| Hepatospora eriocheir str. canceri (Hepatospora eriocheir ASM208787v1.0) | 3052 | 1954 | 1098 | 822 | 1132 | 699 | 0 | 0 | 0 | ||
| Amphiamblys sp. WSBS2006 (Amphiamblys sp. WSBS2006) | 3642 | 2568 | 1074 | 1325 | 1243 | 1223 | 0 | 0 | 0 | ||
| Nematocida displodere str. JUm2807 (Nematocida displodere) | 2278 | 1223 | 1055 | 292 | 931 | 255 | 0 | 0 | 0 | ||
| Pseudoloma neurophilia str. MK1 (Pseudoloma neurophilia) | 3644 | 2291 | 1353 | 628 | 1663 | 705 | 0 | 0 | 0 | ||
| Enterocytozoon hepatopenaei str. TH1 (Enterocytozoon hepatopenaei) | 2536 | 1786 | 750 | 273 | 1513 | 326 | 0 | 0 | 0 | ||
| Enterocytozoon bieneusi H348 (Enterocytozoon bieneusi H348) | 3632 | 2929 | 703 | 707 | 2222 | 1510 | 0 | 0 | 0 |
Mixiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mixia osmundae IAM 14324 (Mixia osmundae IAM 14324 Mosmundae_2.0) | 6726 | 5500 | 1226 | 405 | 5095 | 525 | 0 | 0 | 0 |
Mortierellomycotina
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Podila verticillata NRRL 6337 (Podila verticillata NRRL 6337) | 1508 | 1308 | 200 | 113 | 1195 | 193 | 0 | 0 | 0 | ||
| Lobosporangium transversale str. NRRL 3116 (Lobosporangium transversale) | 11818 | 10436 | 1382 | 942 | 9494 | 1784 | 0 | 0 | 0 | ||
| Linnemannia elongata AG-77 (Linnemannia elongata AG-77) | 14959 | 12391 | 2568 | 1285 | 11106 | 2851 | 0 | 0 | 0 |
Mucoromycotina
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Choanephora cucurbitarum str. KUS-F28377 (Choanephora cucurbitarum) | 11977 | 10532 | 1445 | 794 | 9738 | 1282 | 0 | 0 | 0 | ||
| Mucor ambiguus str. NBRC 6742 (Mucor ambiguus) | 11343 | 10463 | 880 | 563 | 9900 | 854 | 0 | 0 | 0 | ||
| Syncephalastrum racemosum str. NRRL 2496 (Syncephalastrum racemosum) | 11121 | 9614 | 1507 | 501 | 9113 | 854 | 0 | 0 | 0 | ||
| Bifiguratus adelaidae str. AZ0501 (Bifiguratus adelaidae) | 5719 | 4838 | 881 | 124 | 4714 | 429 | 0 | 0 | 0 | ||
| Rhizopus delemar RA 99-880 (Rhizopus delemar RA 99-880) | 17459 | 15232 | 2227 | 1632 | 13600 | 5732 | 0 | 0 | 0 | ||
| Rhizopus microsporus str. CBS-344.29 (Rhizopus microsporus Rmicro_CBS_344.29_Allpaths-LG) | 19564 | 18458 | 1106 | 1485 | 16973 | 7832 | 0 | 0 | 0 | ||
| Lichtheimia corymbifera JMRC:FSU:9682 (Lichtheimia corymbifera JMRC:FSU:9682) | 12282 | 11118 | 1164 | 691 | 10427 | 1082 | 0 | 0 | 0 | ||
| Lichtheimia ramosa str. JMRC:FSU:6197 (Lichtheimia ramosa) | 11510 | 11202 | 308 | 40 | 11162 | 382 | 0 | 0 | 0 | ||
| Hesseltinella vesiculosa str. NRRL 3301 (Hesseltinella vesiculosa) | 11139 | 9848 | 1291 | 890 | 8958 | 1195 | 0 | 0 | 0 | ||
| Absidia repens str. NRRL 1336 (Absidia repens) | 14915 | 13256 | 1659 | 1049 | 12207 | 3941 | 0 | 0 | 0 |
Myxotrichaceae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Oidiodendron maius Zn (Oidiodendron maius Zn) | 16701 | 14698 | 2003 | 204 | 14494 | 960 | 0 | 0 | 0 | ||
| Amorphotheca resinae ATCC 22711 (Amorphotheca resinae ATCC 22711) | 9642 | 8294 | 1348 | 50 | 8244 | 70 | 0 | 0 | 0 |
Nosematidae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Vittaforma corneae ATCC 50505 (Vittaforma corneae ATCC 50505) | 2238 | 1645 | 593 | 206 | 1439 | 212 | 0 | 0 | 0 | ||
| Nosema apis BRL 01 (Nosema apis BRL 01) | 2764 | 2066 | 698 | 648 | 1418 | 673 | 0 | 0 | 0 |
Onygenales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ascosphaera apis ARSEF 7405 (Ascosphaera apis ARSEF 7405) | 6442 | 5575 | 867 | 124 | 5451 | 200 | 0 | 0 | 0 | ||
| Paracoccidioides brasiliensis Pb18 (Paracoccidioides brasiliensis Pb18) | 8390 | 6922 | 1468 | 25 | 6897 | 80 | 0 | 0 | 0 | ||
| Helicocarpus griseus UAMH5409 (Helicocarpus griseus UAMH5409) | 10224 | 9448 | 776 | 90 | 9358 | 205 | 0 | 0 | 0 | ||
| Histoplasma capsulatum (Histoplasma ohiense (nom. inval.) strain G217B) | 11221 | 8739 | 2482 | 1212 | 7527 | 1355 | 0 | 0 | 0 | ||
| Coccidioides immitis H538.4 (Coccidioides immitis H538.4) | 10538 | 8429 | 2109 | 22 | 8407 | 97 | 0 | 0 | 0 | ||
| Trichophyton equinum CBS 127.97 (Trichophyton equinum CBS 127.97) | 8676 | 7632 | 1044 | 35 | 7597 | 69 | 0 | 0 | 0 | ||
| Uncinocarpus reesii 1704 str. UAMH 1704 (Uncinocarpus reesii 1704) | 7760 | 7029 | 731 | 42 | 6987 | 56 | 0 | 0 | 0 | ||
| Coccidioides posadasii str. Silveira (Coccidioides posadasii str. Silveira) | 10225 | 8579 | 1646 | 56 | 8523 | 155 | 0 | 0 | 0 | ||
| Emmonsia crescens UAMH 3008 (Emmonsia crescens UAMH 3008) | 9444 | 8387 | 1057 | 78 | 8309 | 145 | 0 | 0 | 0 | ||
| Nannizzia gypsea CBS 118893 (Nannizzia gypsea CBS 118893) | 8921 | 8038 | 883 | 13 | 8025 | 47 | 0 | 0 | 0 | ||
| Microsporum canis CBS 113480 (Microsporum canis CBS 113480) | 8765 | 8027 | 738 | 2 | 8025 | 59 | 0 | 0 | 0 | ||
| Blastomyces dermatitidis ER-3 (Blastomyces dermatitidis ER-3) | 9755 | 8634 | 1121 | 865 | 7769 | 940 | 0 | 0 | 0 | ||
| Polytolypa hystricis UAMH7299 (Polytolypa hystricis UAMH7299) | 9934 | 8802 | 1132 | 66 | 8736 | 148 | 0 | 0 | 0 |
Ophiostomatales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sporothrix insectorum RCEF 264 (Sporothrix insectorum RCEF 264) | 9496 | 8892 | 604 | 49 | 8843 | 196 | 0 | 0 | 0 | ||
| Ophiostoma piceae UAMH 11346 str. UAMH-11346 (Ophiostoma piceae UAMH 11346) | 8884 | 8240 | 644 | 27 | 8213 | 67 | 0 | 0 | 0 | ||
| Grosmannia clavigera kw1407 (Grosmannia clavigera kw1407) | 8312 | 7690 | 622 | 8 | 7682 | 79 | 0 | 0 | 0 | ||
| Sporothrix brasiliensis 5110 (Sporothrix brasiliensis 5110) | 9091 | 8682 | 409 | 4 | 8678 | 30 | 0 | 0 | 0 | ||
| Sporothrix schenckii ATCC 58251 (Sporothrix schenckii ATCC 58251) | 8674 | 8575 | 99 | 0 | 8575 | 9 | 0 | 0 | 0 |
Orbiliales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Dactylellina haptotyla CBS 200.50 (Dactylellina haptotyla CBS 200.50) | 10959 | 9885 | 1074 | 133 | 9752 | 437 | 0 | 0 | 0 | ||
| Arthrobotrys oligospora ATCC 24927 (Orbilia oligospora ATCC 24927) | 11479 | 10029 | 1450 | 239 | 9790 | 507 | 0 | 0 | 0 | ||
| Drechslerella stenobrocha 248 (Drechslerella stenobrocha 248) | 5597 | 5239 | 358 | 4 | 5235 | 14 | 0 | 0 | 0 |
Ordosporidae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ordospora colligata OC4 (Ordospora colligata OC4) | 1820 | 1429 | 391 | 13 | 1416 | 33 | 0 | 0 | 0 |
Pezizales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Tuber borchii str. Tbo3840 (Tuber borchii) | 12345 | 10092 | 2253 | 995 | 9097 | 2225 | 0 | 0 | 0 | ||
| Tuber magnatum (Tuber magnatum) | 9431 | 8381 | 1050 | 549 | 7832 | 891 | 0 | 0 | 0 | ||
| Tuber melanosporum (Tuber melanosporum Mel28) | 7496 | 6552 | 944 | 25 | 6527 | 94 | 0 | 0 | 0 |
Pleistophoridae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Vavraia culicis subsp. floridensis (Vavraia culicis subsp. floridensis) | 2773 | 2322 | 451 | 119 | 2203 | 188 | 0 | 0 | 0 | ||
| Trachipleistophora hominis (Trachipleistophora hominis) | 3212 | 2406 | 806 | 198 | 2208 | 263 | 0 | 0 | 0 |
Pleosporales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Alternaria alternata str. SRC1lrK2f (Alternaria alternata Altal1) | 13466 | 12077 | 1389 | 35 | 12042 | 106 | 0 | 0 | 0 | ||
| Corynespora cassiicola Philippines (Corynespora cassiicola Philippines) | 17158 | 13589 | 3569 | 256 | 13333 | 524 | 0 | 0 | 0 | ||
| Stagonospora sp. SRC1lsM3a (Stagonospora sp. SRC1lsM3a) | 14425 | 12818 | 1607 | 67 | 12751 | 193 | 0 | 0 | 0 | ||
| Phaeosphaeria nodorum (Parastagonospora nodorum SN15) | 12391 | 10375 | 2016 | 27 | 10348 | 54 | 0 | 0 | 0 | ||
| Exserohilum turcica Et28A (Exserohilum turcica Et28A) | 11698 | 10715 | 983 | 71 | 10644 | 249 | 0 | 0 | 0 | ||
| Clohesyomyces aquaticus str. CBS 115471 (Clohesyomyces aquaticus) | 15811 | 12511 | 3300 | 138 | 12373 | 268 | 0 | 0 | 0 | ||
| Pyrenochaeta sp. DS3sAY3a (Pyrenochaeta sp. DS3sAY3a) | 14990 | 13000 | 1990 | 111 | 12889 | 249 | 0 | 0 | 0 | ||
| Pyrenophora teres (Pyrenophora teres f. teres 0-1) | 11799 | 11198 | 601 | 224 | 10974 | 519 | 0 | 0 | 0 | ||
| Stemphylium lycopersici str. CIDEFI 216 (Stemphylium lycopersici ASM119154v1) | 8997 | 8685 | 312 | 2 | 8683 | 30 | 0 | 0 | 0 | ||
| Epicoccum nigrum str. ICMP 19927 (Epicoccum nigrum) | 12025 | 10701 | 1324 | 56 | 10645 | 111 | 0 | 0 | 0 | ||
| Periconia macrospinosa str. DSE2036 (Periconia macrospinosa) | 18735 | 15494 | 3241 | 606 | 14888 | 1326 | 0 | 0 | 0 | ||
| Leptosphaeria maculans (Leptosphaeria maculans JN3) | 12469 | 8976 | 3493 | 22 | 8954 | 40 | 0 | 0 | 0 | ||
| Bipolaris maydis C5 (Bipolaris maydis C5) | 13311 | 12315 | 996 | 142 | 12173 | 647 | 0 | 0 | 0 | ||
| Pyrenophora tritici-repentis Pt-1C-BFP (Pyrenophora tritici-repentis Pt-1C-BFP) | 12169 | 10976 | 1193 | 50 | 10926 | 348 | 0 | 0 | 0 | ||
| Paraphaeosphaeria sporulosa str. AP3s5-JAC2a (Paraphaeosphaeria sporulosa) | 14734 | 12110 | 2624 | 51 | 12059 | 157 | 0 | 0 | 0 | ||
| Ascochyta rabiei str. ArDII (Ascochyta rabiei) | 10596 | 9733 | 863 | 22 | 9711 | 90 | 0 | 0 | 0 | ||
| Bipolaris oryzae ATCC 44560 (Bipolaris oryzae ATCC 44560) | 12002 | 11125 | 877 | 6 | 11119 | 32 | 0 | 0 | 0 |
Pneumocystidales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Pneumocystis jirovecii RU7 (Pneumocystis jirovecii RU7) | 3761 | 3570 | 191 | 151 | 3419 | 170 | 0 | 0 | 0 | ||
| Pneumocystis carinii B80 (Pneumocystis carinii B80) | 3646 | 3569 | 77 | 56 | 3513 | 91 | 0 | 0 | 0 | ||
| Pneumocystis murina B123 (Pneumocystis murina B123) | 3623 | 3554 | 69 | 5 | 3549 | 52 | 0 | 0 | 0 |
Polyporales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Phlebia centrifuga str. FBCC195 (Hermanssonia centrifuga ASM191385v2) | 13684 | 10534 | 3150 | 1009 | 9525 | 1983 | 0 | 0 | 0 | ||
| Fomitopsis pinicola FP-58527 SS1 (Fomitopsis pinicola FP-58527 SS1) | 13851 | 12515 | 1336 | 935 | 11580 | 2251 | 0 | 0 | 0 | ||
| Grifola frondosa str. 9006-11 (Grifola frondosa) | 15039 | 11139 | 3900 | 1148 | 9991 | 2098 | 0 | 0 | 0 | ||
| Phlebiopsis gigantea 11061_1 CR5-6 (Phlebiopsis gigantea 11061_1 CR5-6) | 11855 | 9986 | 1869 | 298 | 9688 | 923 | 0 | 0 | 0 | ||
| Dichomitus squalens LYAD-421 SS1 (Dichomitus squalens LYAD-421 SS1) | 7192 | 6302 | 890 | 348 | 5954 | 1126 | 0 | 0 | 0 | ||
| Laetiporus sulphureus 93-53 (Laetiporus sulphureus 93-53) | 13740 | 11575 | 2165 | 1464 | 10111 | 2381 | 0 | 0 | 0 | ||
| Daedalea quercina L-15889 (Daedalea quercina L-15889) | 12191 | 10283 | 1908 | 345 | 9938 | 921 | 0 | 0 | 0 | ||
| Trametes coccinea BRFM310 (Trametes coccinea BRFM310) | 12692 | 10798 | 1894 | 298 | 10500 | 922 | 0 | 0 | 0 | ||
| Trametes cinnabarina str. BRFM137 (Trametes cinnabarina) | 10233 | 9806 | 427 | 168 | 9638 | 981 | 0 | 0 | 0 | ||
| Ganoderma sinense ZZ0214-1 (Ganoderma sinense ZZ0214-1) | 15478 | 13612 | 1866 | 1159 | 12453 | 3603 | 0 | 0 | 0 | ||
| Postia placenta Mad-698-R (Postia placenta Mad-698-R) | 9083 | 8364 | 719 | 2155 | 6209 | 3862 | 0 | 0 | 0 | ||
| Phanerochaete chrysosporium (Phanerochaete chrysosporium RP-78) | 13594 | 11130 | 2464 | 714 | 10416 | 1600 | 0 | 0 | 0 | ||
| Fibroporia radiculosa str. TFFH 294 (Fibroporia radiculosa) | 9262 | 8487 | 775 | 420 | 8067 | 977 | 0 | 0 | 0 | ||
| Gelatoporia subvermispora B (Gelatoporia subvermispora B) | 12122 | 10391 | 1731 | 1053 | 9338 | 2389 | 0 | 0 | 0 | ||
| Wolfiporia cocos MD-104 SS10 (Wolfiporia cocos MD-104 SS10) | 12212 | 10498 | 1714 | 1015 | 9483 | 2069 | 0 | 0 | 0 |
Pucciniales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Puccinia sorghi str. RO10H11247 (Puccinia sorghi) | 21078 | 16732 | 4346 | 6015 | 10717 | 7576 | 0 | 0 | 0 | ||
| Puccinia striiformis f. sp. tritici PST-130 str. Race 130 (Puccinia striiformis f. sp. tritici PST-130) | 18019 | 14208 | 3811 | 1743 | 12465 | 4118 | 0 | 0 | 0 | ||
| Puccinia coronata var. avenae f. sp. avenae (Puccinia coronata f. sp. avenae ASM287327v1) | 28270 | 26232 | 2038 | 8505 | 17727 | 15626 | 0 | 0 | 0 | ||
| Puccinia graminis (Puccinia graminis f. sp. tritici CRL 75-36-700-3) | 15800 | 14534 | 1266 | 157 | 14377 | 1468 | 0 | 0 | 0 | ||
| Puccinia graminis Ug99 (Puccinia graminis f. sp. tritici 04KEN156/4) | 22154 | 18928 | 3226 | 1030 | 17898 | 3988 | 0 | 0 | 0 | ||
| Melampsora larici-populina (Melampsora larici-populina 98AG31) | 16372 | 13540 | 2832 | 6150 | 7390 | 6633 | 0 | 0 | 0 | ||
| Puccinia triticina (Puccinia triticina 1-1 BBBD Race 1) | 11638 | 10586 | 1052 | 1273 | 9313 | 3107 | 0 | 0 | 0 |
Rhizophydiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Batrachochytrium dendrobatidis JEL423 (Batrachochytrium dendrobatidis JEL423) | 142 | 114 | 28 | 58 | 56 | 57 | 0 | 0 | 0 |
Russulales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Stereum hirsutum FP-91666 SS1 (Stereum hirsutum FP-91666 SS1) | 1612 | 1223 | 389 | 159 | 1064 | 251 | 0 | 0 | 0 | ||
| Heterobasidion irregulare TC 32-1 (Heterobasidion irregulare TC 32-1) | 13264 | 10752 | 2512 | 1608 | 9144 | 2570 | 0 | 0 | 0 | ||
| Peniophora sp. CONT (Peniophora sp. CONT) | 18940 | 15326 | 3614 | 4185 | 11141 | 5964 | 0 | 0 | 0 |
Saccharomycetales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Clavispora lusitaniae ATCC 42720 (Clavispora lusitaniae ATCC 42720) | 5936 | 5281 | 655 | 54 | 5227 | 123 | 0 | 0 | 0 | ||
| Lachancea dasiensis CBS 10888 (Lachancea dasiensis) | 5096 | 5006 | 90 | 5 | 5001 | 49 | 0 | 0 | 0 | ||
| Pachysolen tannophilus NRRL Y-2460 (Pachysolen tannophilus NRRL Y-2460) | 5664 | 5069 | 595 | 49 | 5020 | 185 | 0 | 0 | 0 | ||
| Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 (Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993) | 5837 | 5094 | 743 | 131 | 4963 | 202 | 0 | 0 | 0 | ||
| Debaryomyces hansenii CBS767 (Debaryomyces hansenii CBS767) | 6272 | 5872 | 400 | 134 | 5738 | 261 | 0 | 0 | 0 | ||
| Eremothecium cymbalariae DBVPG#7215 (Eremothecium cymbalariae DBVPG#7215) | 4434 | 4323 | 111 | 0 | 4323 | 12 | 0 | 0 | 0 | ||
| Nadsonia fulvescens var. elongata DSM 6958 (Nadsonia fulvescens var. elongata DSM 6958) | 5648 | 4846 | 802 | 37 | 4809 | 333 | 0 | 0 | 0 | ||
| Naumovozyma castellii CBS 4309 (Naumovozyma castellii CBS 4309) | 5592 | 5431 | 161 | 91 | 5340 | 224 | 0 | 0 | 0 | ||
| Cyberlindnera jadinii str. CBS1600 (Cyberlindnera jadinii) | 5057 | 4589 | 468 | 84 | 4505 | 212 | 0 | 0 | 0 | ||
| Spathaspora passalidarum NRRL Y-27907 (Spathaspora passalidarum NRRL Y-27907) | 5983 | 5595 | 388 | 107 | 5488 | 304 | 0 | 0 | 0 | ||
| Wickerhamiella sorbophila str. DS02 (Wickerhamiella sorbophila) | 4741 | 4046 | 695 | 67 | 3979 | 174 | 0 | 0 | 0 | ||
| Hanseniaspora guilliermondii (Hanseniaspora guilliermondii) | 4070 | 3021 | 1049 | 32 | 2989 | 131 | 0 | 0 | 0 | ||
| Ogataea polymorpha str. NCYC 495 leu1.1 (Ogataea polymorpha) | 5171 | 5034 | 137 | 0 | 5034 | 49 | 0 | 0 | 0 | ||
| Sugiyamaella lignohabitans str. CBS 10342 (Sugiyamaella lignohabitans) | 5135 | 4776 | 359 | 54 | 4722 | 232 | 0 | 0 | 0 | ||
| Komagataella phaffii GS115 (Komagataella phaffii GS115 ASM174695v1) | 5035 | 4924 | 111 | 5 | 4919 | 18 | 0 | 0 | 0 | ||
| Kazachstania naganishii CBS 8797 (Kazachstania naganishii CBS 8797) | 5321 | 5066 | 255 | 49 | 5017 | 185 | 0 | 0 | 0 | ||
| Wickerhamomyces ciferrii str. NRRL Y-1031 (Wickerhamomyces ciferrii) | 6702 | 6364 | 338 | 447 | 5917 | 671 | 0 | 0 | 0 | ||
| Vanderwaltozyma polyspora DSM 70294 (Vanderwaltozyma polyspora DSM 70294) | 5328 | 5133 | 195 | 95 | 5038 | 269 | 0 | 0 | 0 | ||
| Zygosaccharomyces rouxii str. CBS 732 (Zygosaccharomyces rouxii ASM2636v1) | 4991 | 4926 | 65 | 2 | 4924 | 95 | 0 | 0 | 0 | ||
| Wickerhamomyces anomalus NRRL Y-366-8 (Wickerhamomyces anomalus NRRL Y-366-8) | 6421 | 6045 | 376 | 118 | 5927 | 340 | 0 | 0 | 0 | ||
| Candida albicans (Candida albicans SC5314) | 6180 | 5815 | 365 | 40 | 5775 | 202 | 0 | 0 | 0 | ||
| Ashbya gossypii (Eremothecium gossypii ATCC 10895) | 4775 | 4774 | 1 | 0 | 4774 | 11 | 0 | 0 | 0 | ||
| Meyerozyma guilliermondii ATCC 6260 (Meyerozyma guilliermondii ATCC 6260) | 5920 | 5590 | 330 | 57 | 5533 | 212 | 0 | 0 | 0 | ||
| Eremothecium gossypii FDAG1 (Eremothecium gossypii FDAG1) | 4774 | 4772 | 2 | 0 | 4772 | 5 | 0 | 0 | 0 | ||
| Candida duobushaemulonis ([Candida] duobushaemulonis strain strain B09383) | 666 | 654 | 12 | 0 | 654 | 2 | 0 | 0 | 0 | ||
| Naumovozyma dairenensis CBS 421 (Naumovozyma dairenensis CBS 421) | 5548 | 5395 | 153 | 53 | 5342 | 208 | 0 | 0 | 0 | ||
| Scheffersomyces stipitis CBS 6054 (Scheffersomyces stipitis CBS 6054) | 5818 | 5646 | 172 | 81 | 5565 | 236 | 0 | 0 | 0 | ||
| Pichia kudriavzevii str. SD108 (Pichia kudriavzevii ASM76445v1) | 7107 | 6045 | 1062 | 672 | 5373 | 1099 | 0 | 0 | 0 | ||
| Candida tropicalis (Candida tropicalis MYA-3404) | 6254 | 5933 | 321 | 136 | 5797 | 400 | 0 | 0 | 0 | ||
| Brettanomyces bruxellensis AWRI1499 (Brettanomyces bruxellensis AWRI1499) | 4861 | 3770 | 1091 | 20 | 3750 | 109 | 0 | 0 | 0 | ||
| Cyberlindnera fabianii str. YJS4271 (Cyberlindnera fabianii ASM320585v1) | 5674 | 5385 | 289 | 25 | 5360 | 155 | 0 | 0 | 0 | ||
| Candida auris ([Candida] auris strain strain B8441) | 896 | 873 | 23 | 2 | 871 | 10 | 0 | 0 | 0 | ||
| Ascoidea rubescens DSM 1968 (Ascoidea rubescens DSM 1968) | 6785 | 5031 | 1754 | 257 | 4774 | 544 | 0 | 0 | 0 | ||
| Tetrapisispora phaffii CBS 4417 (Tetrapisispora phaffii CBS 4417) | 5253 | 5056 | 197 | 33 | 5023 | 149 | 0 | 0 | 0 | ||
| Kuraishia capsulata CBS 1993 (Kuraishia capsulata CBS 1993) | 6029 | 5379 | 650 | 40 | 5339 | 230 | 0 | 0 | 0 | ||
| Torulaspora delbrueckii str. CBS 1146 (Torulaspora delbrueckii) | 4972 | 4890 | 82 | 8 | 4882 | 63 | 0 | 0 | 0 | ||
| Tetrapisispora blattae CBS 6284 (Tetrapisispora blattae CBS 6284) | 5389 | 5033 | 356 | 40 | 4993 | 335 | 0 | 0 | 0 | ||
| Ogataea parapolymorpha DL-1 (Ogataea parapolymorpha DL-1) | 5325 | 5215 | 110 | 0 | 5215 | 13 | 0 | 0 | 0 | ||
| Millerozyma farinosa CBS 7064 (Millerozyma farinosa CBS 7064) | 11175 | 10993 | 182 | 553 | 10440 | 5487 | 0 | 0 | 0 | ||
| [Candida] pseudohaemulonii ([Candida] pseudohaemulonii strain B12108) | 5134 | 4917 | 217 | 97 | 4820 | 169 | 0 | 0 | 0 | ||
| Zygosaccharomyces parabailii str. ATCC 60483 (Zygosaccharomyces parabailii) | 10086 | 10032 | 54 | 134 | 9898 | 4961 | 0 | 0 | 0 | ||
| Lachancea lanzarotensis str. CBS 12615 (Lachancea lanzarotensis) | 5058 | 4991 | 67 | 5 | 4986 | 56 | 0 | 0 | 0 | ||
| Lodderomyces elongisporus NRRL YB-4239 (Lodderomyces elongisporus NRRL YB-4239) | 5799 | 5392 | 407 | 117 | 5275 | 252 | 0 | 0 | 0 | ||
| Komagataella pastoris (Komagataella phaffii GS115) | 5040 | 4979 | 61 | 0 | 4979 | 7 | 0 | 0 | 0 | ||
| Candida parapsilosis (Candida parapsilosis CDC317) | 5863 | 5638 | 225 | 42 | 5596 | 319 | 0 | 0 | 0 | ||
| Lipomyces starkeyi NRRL Y-11557 (Lipomyces starkeyi NRRL Y-11557) | 8182 | 6723 | 1459 | 730 | 5993 | 1190 | 0 | 0 | 0 | ||
| Babjeviella inositovora NRRL Y-12698 (Babjeviella inositovora NRRL Y-12698) | 6398 | 5183 | 1215 | 105 | 5078 | 380 | 0 | 0 | 0 | ||
| Suhomyces tanzawaensis NRRL Y-17324 (Suhomyces tanzawaensis NRRL Y-17324) | 5884 | 5305 | 579 | 48 | 5257 | 115 | 0 | 0 | 0 | ||
| Candida glabrata ([Candida] glabrata CBS 138) | 5311 | 4993 | 318 | 98 | 4895 | 190 | 0 | 0 | 0 | ||
| Pichia membranifaciens NRRL Y-2026 (Pichia membranifaciens NRRL Y-2026) | 5542 | 4980 | 562 | 34 | 4946 | 97 | 0 | 0 | 0 | ||
| [Candida] haemuloni ([Candida] haemuloni strain B11899) | 733 | 717 | 16 | 2 | 715 | 7 | 0 | 0 | 0 | ||
| Hyphopichia burtonii NRRL Y-1933 (Hyphopichia burtonii NRRL Y-1933) | 5995 | 5505 | 490 | 44 | 5461 | 145 | 0 | 0 | 0 | ||
| Tortispora caseinolytica NRRL Y-17796 (Tortispora caseinolytica NRRL Y-17796) | 4656 | 3885 | 771 | 76 | 3809 | 130 | 0 | 0 | 0 | ||
| Kazachstania africana CBS 2517 (Kazachstania africana CBS 2517) | 5378 | 5185 | 193 | 49 | 5136 | 211 | 0 | 0 | 0 | ||
| Yarrowia lipolytica (Yarrowia lipolytica CLIB122) | 6447 | 5478 | 969 | 267 | 5211 | 693 | 0 | 0 | 0 | ||
| Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C) | 6600 | 5564 | 1036 | 121 | 5443 | 358 | 0 | 0 | 0 |
Schizosaccharomycetales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Schizosaccharomyces pombe (Schizosaccharomyces pombe 972h-) | 5145 | 4910 | 235 | 68 | 4842 | 193 | 0 | 0 | 0 | ||
| Schizosaccharomyces cryophilus (Schizosaccharomyces cryophilus OY26) | 5155 | 4982 | 173 | 51 | 4931 | 188 | 0 | 0 | 0 | ||
| Schizosaccharomyces octosporus (Schizosaccharomyces octosporus yFS286) | 4986 | 4903 | 83 | 47 | 4856 | 126 | 0 | 0 | 0 | ||
| Schizosaccharomyces japonicus (Schizosaccharomyces japonicus yFS275) | 4878 | 4519 | 359 | 57 | 4462 | 195 | 0 | 0 | 0 |
Sclerotiniaceae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sclerotinia sclerotiorum (Sclerotinia sclerotiorum 1980 UF-70) | 10175 | 7105 | 3070 | 109 | 6996 | 342 | 0 | 0 | 0 | ||
| Botrytis cinerea B05.10 (Botrytis cinerea B05.10) | 11707 | 10518 | 1189 | 74 | 10444 | 128 | 0 | 0 | 0 |
Sebacinales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Serendipita indica DSM 11827 (Serendipita indica DSM 11827) | 11766 | 10067 | 1699 | 1260 | 8807 | 2164 | 0 | 0 | 0 | ||
| Serendipita vermifera MAFF 305830 (Serendipita vermifera MAFF 305830) | 15234 | 12937 | 2297 | 2165 | 10772 | 4551 | 0 | 0 | 0 |
Sordariales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Neurospora crassa (Neurospora crassa OR74A) | 9758 | 8639 | 1119 | 34 | 8605 | 85 | 0 | 0 | 0 | ||
| Madurella mycetomatis str. mm55 (Madurella mycetomatis) | 10707 | 10155 | 552 | 149 | 10006 | 1320 | 0 | 0 | 0 | ||
| Sordaria macrospora k-hell (Sordaria macrospora k-hell) | 9898 | 9052 | 846 | 59 | 8993 | 198 | 0 | 0 | 0 | ||
| Chaetomium globosum CBS 148.51 (Chaetomium globosum CBS 148.51) | 11048 | 9498 | 1550 | 150 | 9348 | 638 | 0 | 0 | 0 |
Sordariomycetidae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Valsa mali var. pyri str. SXYL134 (Valsa mali var. pyri) | 10741 | 9547 | 1194 | 23 | 9524 | 62 | 0 | 0 | 0 | ||
| Diaporthe ampelina (Diaporthe ampelina) | 10704 | 9989 | 715 | 27 | 9962 | 84 | 0 | 0 | 0 | ||
| Coniella lustricola str. B22-T-1 (Coniella lustricola) | 11314 | 8650 | 2664 | 8 | 8642 | 57 | 0 | 0 | 0 | ||
| Phaeoacremonium minimum UCRPA7 (Phaeoacremonium minimum UCRPA7) | 8834 | 8449 | 385 | 42 | 8407 | 90 | 0 | 0 | 0 | ||
| Coniochaeta ligniaria NRRL 30616 (Coniochaeta ligniaria NRRL 30616) | 13658 | 10929 | 2729 | 326 | 10603 | 381 | 0 | 0 | 0 |
Sporidiobolales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Rhodotorula toruloides ATCC 204091 (Rhodotorula toruloides ATCC 204091) | 2817 | 2546 | 271 | 100 | 2446 | 129 | 0 | 0 | 0 | ||
| Rhodotorula graminis WP1 (Rhodotorula graminis WP1) | 7275 | 6469 | 806 | 148 | 6321 | 395 | 0 | 0 | 0 |
Spraguidae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Spraguea lophii 42_110 (Spraguea lophii 42_110) | 2499 | 1660 | 839 | 257 | 1403 | 259 | 0 | 0 | 0 |
Taphrinomycotina
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Neolecta irregularis DAH-3 (Neolecta irregularis DAH-3) | 5531 | 4240 | 1291 | 202 | 4038 | 307 | 0 | 0 | 0 | ||
| Protomyces lactucaedebilis str. 12-1054 (Protomyces lactucae-debilis) | 6725 | 5291 | 1434 | 568 | 4723 | 552 | 0 | 0 | 0 |
Tremellales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Naematelia encephala str. 68-887.2 (Naematelia encephala) | 7964 | 6875 | 1089 | 72 | 6803 | 159 | 0 | 0 | 0 | ||
| Kockovaella imperatae str. NRRL Y-17943 (Kockovaella imperatae) | 7392 | 6398 | 994 | 73 | 6325 | 172 | 0 | 0 | 0 | ||
| Tremella mesenterica DSM 1558 (Tremella mesenterica DSM 1558) | 1456 | 1009 | 447 | 207 | 802 | 185 | 0 | 0 | 0 | ||
| Cryptococcus neoformans var. neoformans JEC21 (Cryptococcus neoformans var. neoformans JEC21) | 6632 | 6305 | 327 | 77 | 6228 | 240 | 0 | 0 | 0 | ||
| Kwoniella bestiolae CBS 10118 (Kwoniella bestiolae CBS 10118) | 9133 | 7652 | 1481 | 381 | 7271 | 517 | 0 | 0 | 0 |
Tubulinosematidae
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Anncaliia algerae PRA339 (Anncaliia algerae PRA339) | 3598 | 2337 | 1261 | 856 | 1481 | 811 | 0 | 0 | 0 |
Ustilaginales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Pseudozyma hubeiensis SY62 (Pseudozyma hubeiensis SY62) | 7472 | 6160 | 1312 | 11 | 6149 | 18 | 0 | 0 | 0 | ||
| Sporisorium reilianum (Sporisorium reilianum SRZ2) | 6673 | 6503 | 170 | 30 | 6473 | 69 | 0 | 0 | 0 | ||
| Testicularia cyperi str. MCA 3645 (Testicularia cyperi) | 7069 | 5712 | 1357 | 85 | 5627 | 153 | 0 | 0 | 0 | ||
| Moesziomyces aphidis DSM 70725 (Moesziomyces aphidis) | 6011 | 5625 | 386 | 21 | 5604 | 37 | 0 | 0 | 0 | ||
| Ustilago maydis (Ustilago maydis 521) | 6765 | 6460 | 305 | 27 | 6433 | 83 | 0 | 0 | 0 | ||
| Anthracocystis flocculosa PF-1 (Pseudozyma flocculosa PF-1) | 4425 | 4039 | 386 | 94 | 3945 | 126 | 0 | 0 | 0 | ||
| Kalmanozyma brasiliensis GHG001 (Kalmanozyma brasiliensis GHG001) | 5765 | 5620 | 145 | 0 | 5620 | 7 | 0 | 0 | 0 | ||
| Ustilago hordei str. Uh4857-4 (Ustilago hordei) | 7109 | 6693 | 416 | 310 | 6383 | 480 | 0 | 0 | 0 |
Verrucariales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endocarpon pusillum Z07020 (Endocarpon pusillum Z07020) | 9238 | 8033 | 1205 | 205 | 7828 | 334 | 0 | 0 | 0 |
Wallemiales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Wallemia ichthyophaga EXF-994 (Wallemia ichthyophaga EXF-994) | 4865 | 4014 | 851 | 105 | 3909 | 229 | 0 | 0 | 0 |
Xylariales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Pseudomassariella vexata str. CBS 129021 (Pseudomassariella vexata) | 12565 | 10437 | 2128 | 109 | 10328 | 236 | 0 | 0 | 0 | ||
| Daldinia sp. EC12 (Daldinia sp. EC12) | 11161 | 10195 | 966 | 36 | 10159 | 83 | 0 | 0 | 0 | ||
| Eutypa lata UCREL1 (Eutypa lata UCREL1) | 11685 | 10744 | 941 | 91 | 10653 | 224 | 0 | 0 | 0 | ||
| Hypoxylon sp. CI-4A (Hypoxylon sp. CI-4A) | 11701 | 10505 | 1196 | 37 | 10468 | 109 | 0 | 0 | 0 | ||
| Pestalotiopsis fici W106-1 (Pestalotiopsis fici W106-1) | 15413 | 14164 | 1249 | 146 | 14018 | 508 | 0 | 0 | 0 | ||
| Rosellinia necatrix str. W97 (Rosellinia necatrix) | 12444 | 10618 | 1826 | 44 | 10574 | 183 | 0 | 0 | 0 |
Fungi
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sistotremastrum niveocremeum HHB9708 (Sistotremastrum niveocremeum HHB9708) | 13069 | 12137 | 932 | 233 | 11904 | 529 | 0 | 0 | 0 | ||
| Acaromyces ingoldii str. MCA 4198 (Acaromyces ingoldii) | 8026 | 7013 | 1013 | 272 | 6741 | 365 | 0 | 0 | 0 | ||
| Meira miltonrushii str. MCA 3882 (Meira miltonrushii) | 7452 | 6496 | 956 | 443 | 6053 | 549 | 0 | 0 | 0 | ||
| Pseudomicrostroma glucosiphilum str. MCA 4718 (Pseudomicrostroma glucosiphilum) | 6681 | 5701 | 980 | 147 | 5554 | 170 | 0 | 0 | 0 | ||
| Conidiobolus coronatus NRRL 28638 (Conidiobolus coronatus NRRL 28638) | 10568 | 8253 | 2315 | 2667 | 5586 | 3589 | 0 | 0 | 0 | ||
| Sistotremastrum suecicum HHB10207 ss-3 (Sistotremastrum suecicum HHB10207 ss-3) | 13651 | 12335 | 1316 | 228 | 12107 | 548 | 0 | 0 | 0 | ||
| Cutaneotrichosporon oleaginosum str. IBC0246 (Cutaneotrichosporon oleaginosum Triol1) | 8320 | 6459 | 1861 | 154 | 6305 | 479 | 0 | 0 | 0 | ||
| Xylona heveae TC161 (Xylona heveae TC161) | 8201 | 7033 | 1168 | 63 | 6970 | 79 | 0 | 0 | 0 | ||
| Ceraceosorus guamensis str. MCA 4658 (Ceraceosorus guamensis) | 7822 | 6076 | 1746 | 197 | 5879 | 173 | 0 | 0 | 0 | ||
| Leucosporidium creatinivorum str. 62-1032 (Leucosporidium creatinivorum) | 9854 | 8410 | 1444 | 795 | 7615 | 1272 | 0 | 0 | 0 | ||
| Plicaturopsis crispa FD-325 SS-3 (Plicaturopsis crispa FD-325 SS-3) | 2716 | 2101 | 615 | 289 | 1812 | 503 | 0 | 0 | 0 | ||
| Tilletiopsis washingtonensis str. MCA 4186 (Tilletiopsis washingtonensis) | 7005 | 5610 | 1395 | 57 | 5553 | 57 | 0 | 0 | 0 | ||
| Jaminaea rosea str. MCA 5214 (Jaminaea rosea) | 6858 | 5756 | 1102 | 237 | 5519 | 210 | 0 | 0 | 0 | ||
| Exidia glandulosa HHB12029 (Exidia glandulosa HHB12029) | 26682 | 21987 | 4695 | 7696 | 14291 | 11038 | 0 | 0 | 0 |
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