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Fusarium oxysporum vs Fusarium solani Synteny results

The syntenic regions between Fusarium oxysporum (Fusarium oxysporum f. sp. lycopersici, FO2) and Fusarium solani (Fusarium solani mpVI 77-13-4, v2.0) were extracted from their pairwise alignment in Ensembl Fungi release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 21 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Fusarium oxysporum

Uncovered: 46,438,901 out of 61,470,697
Covered: 15,031,796 out of 61,470,697

Uncovered: 15,126,887 out of 21,631,774
Covered: 6,504,887 out of 21,631,774
Fusarium solani

Uncovered: 36,492,081 out of 51,291,997
Covered: 14,799,916 out of 51,291,997

Uncovered: 16,100,657 out of 22,633,081
Covered: 6,532,424 out of 22,633,081