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Fusarium oxysporum vs Fusarium verticillioides Synteny results

The syntenic regions between Fusarium oxysporum (Fusarium oxysporum f. sp. lycopersici, FO2) and Fusarium verticillioides (Fusarium verticillioides 7600, ASM14955v1) were extracted from their pairwise alignment in Ensembl Fungi release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 19 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Fusarium oxysporum

Uncovered: 26,657,034 out of 61,470,697
Covered: 34,813,663 out of 61,470,697

Uncovered: 6,578,494 out of 21,631,774
Covered: 15,053,280 out of 21,631,774
Fusarium verticillioides

Uncovered: 7,097,537 out of 41,885,085
Covered: 34,787,548 out of 41,885,085

Uncovered: 2,931,266 out of 17,841,847
Covered: 14,910,581 out of 17,841,847