Fusarium oxysporum vs Fusarium verticillioides Synteny results

The syntenic regions between Fusarium oxysporum (Fusarium oxysporum f. sp. lycopersici, FO2) and Fusarium verticillioides (Fusarium verticillioides 7600, ASM14955v1) were extracted from their pairwise alignment in Ensembl Fungi release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 2 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Fusarium oxysporum

Uncovered: 42,984,972 out of 61,470,697
Covered: 18,485,725 out of 61,470,697

Uncovered: 13,860,532 out of 21,631,774
Covered: 7,771,242 out of 21,631,774

Fusarium verticillioides

Uncovered: 23,486,484 out of 41,885,085
Covered: 18,398,601 out of 41,885,085

Uncovered: 10,086,709 out of 17,852,160
Covered: 7,765,451 out of 17,852,160